Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq25 111 2e-19 >seq25 Length=3217807 Score = 111 bits (122), Expect = 2e-19 Identities = 227/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||||||||| ||||| |||| ||||||||| || || ||| ||| | || ||| | Sbjct 2155873 CACCATCTCCCTGTTGGTTTTAATGGGAAAGTCTGTCCCACAGGTATTCAAAAGGTATCT 2155932 Query 162702 CCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 ||||| ||| | |||| | |||||| | | ||||||||||| ||||| || | Sbjct 2155933 CCACTGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCTGG 2155991 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || ||||| || || || || || |||| ||||| |||||| || || | Sbjct 2155992 ACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAAAGCAGG 2156051 Query 162821 AAACTATCCCCATCACGGCC-AGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| | |||| ||| |||| || | | | | ||| || | || || Sbjct 2156052 AAACTATTTTCTTCACAGCCTCGTGAAAAGA-CAGTGAAGACTTCAGGTCAATATGGACA 2156110 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | ||||| || || || || | | | | || || |||||||| ||||| Sbjct 2156111 CAGTAGATGTTCTGTGGAGCATAAATAGATCGTAAGAGTCGTTCAAACATCTCAATCTTC 2156170 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAA 162971 ||||||| ||| || || || || ||||| || Sbjct 2156171 TGGTGTATCACTATGGAGTATGCAATGGGAAA 2156202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578282822387200