Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq19287 163 7e-36 >seq19287 Length=504 Score = 163 bits (180), Expect = 7e-36 Identities = 307/445 (69%), Gaps = 26/445 (6%) Strand=Plus/Minus Query 11547 CAATGCGCAACGAAACCCGCCGCCTCTTCACGGCTTACAAGGACGCAATCGCCAAGCTCA 11606 ||||||| ||||||||||||| |||| | | || | | | ||||| |||| Sbjct 485 CAATGCGTAACGAAACCCGCCAGAAGTTCAACGAGTTCACCGGCCAGGTGGCCAAACTCA 426 Query 11607 ACGGCGTGGCTCGCGTTGATGAGAAGTTCAGCGTCGCGCCGAGCGTCCAGCAGAAGCTGG 11666 ||| | | | ||| | | |||||| ||| ||||| ||||||||||| |||| Sbjct 425 ACGCCATCACCAGCGCCATGGTGCAGTTCAACGTGCAGCCGACCGTCCAGCAGACCCTGG 366 Query 11667 AGACCAAGGTTCAGGAGTCGAGCGATTTCCTGACCCGCATCAACTTCTATGGC-GTGCCC 11725 | |||||| | ||||||||| || ||||| |||||| || || | || Sbjct 365 AAACCAAGATGCAGGAGTCGGTCGCCTTCCTCGGGATGATCAACGTC-ATCCCTGTCGAT 307 Query 11726 GAACAGGAAGCCGAAAAGATCGGCCTGGGCGTGTCGGGC-------CCGGTGGCAAGCAA 11778 ||| | ||| | ||||| |||| | ||| | | || ||||| ||| ||| Sbjct 306 GAAATGAAAGGCCAAAAGGTCGGTATCGGCATCACCAGCACCATCGCCGGTCGCAC-CAA 248 Query 11779 CACCGACACCACCCAGCAGGACCGGCAGACCTCCGACATTGCCACG--CTGGACGGCCGC 11836 ||||||||||| | ||||| ||| || | || |||| || ||| || Sbjct 247 CACCGACACCA------AAGACCGCCAGCCCAACAACCCG--CACGGTCTCTACGACCAG 196 Query 11837 CGCTACCGGTGCGAGCAGACCAACTCCGACACGCACATCACCTAC---CAGAGGCTGGAC 11893 ||||| |||| |||||||||| |||||| || ||||||||| |||| | ||| Sbjct 195 AGCTACGAATGCGCCCAGACCAACTTCGACACCCAGATCACCTACGGCCAGA---TCGAC 139 Query 11894 GCCTGGGCCAAGTTCCCCGACTTCCAGACTCGGATCCGCGACGCCATCATCAAGCGCCAG 11953 ||||||||||||||||||||||||||||| || | || ||||||||| ||| || ||| Sbjct 138 GCCTGGGCCAAGTTCCCCGACTTCCAGACCCGTGTTCGTGACGCCATCCTCACCCGTCAG 79 Query 11954 GCGCTGGATCGCATCATGATCGGCT 11978 | |||||| |||||||||||||||| Sbjct 78 GGGCTGGACCGCATCATGATCGGCT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127853467584576