Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9982 98.7 7e-16 seq674 84.2 1e-11 seq54 82.4 5e-11 >seq9982 Length=962 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | || | || ||||| ||||| || |||||||| ||||| Sbjct 948 ACCACCCCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 889 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTT-CCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| | || |||| || ||| |||||||| |||| | |||||| || | | Sbjct 888 CAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 829 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | || || || || ||||| || | ||| ||| ||||||||| | |||| Sbjct 828 GGATGCCCTCCTTATCCTGGATTTTAGCCTTGA-CATTCTCAATGGTGTCGCTGGGTTCC 770 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||| || | || || |||||||||||||| Sbjct 769 ACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 720 >seq674 Length=110129 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || || ||||||||| | || |||| |||||||| ||||| | Sbjct 14250 CTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 14309 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCT 33648 ||| ||||||||||||| | || | |||| Sbjct 14310 TCAGACGCTGCTGATCTGGGGGAATACCT 14338 >seq54 Length=2421293 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || || ||||| ||||| || ||||| | || |||| || Sbjct 1257643 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 1257584 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| |||| | |||||| || | || | || || || || || || Sbjct 1257583 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT- 1257525 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | ||| | || | ||| || || | |||||| || | ||||| ||||| || || Sbjct 1257524 GGCCTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGT 1257465 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| |||||||||||||| Sbjct 1257464 GAGGGTTTTCACAAAGATCTGCAT 1257441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328621346557440