Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq54 100 7e-16 seq9982 84.2 5e-11 >seq54 Length=2421293 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| ||||| |||| |||||| ||| Sbjct 1257444 CAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGTGAT 1257503 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 1257504 ACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 1257563 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| ||||| || Sbjct 1257564 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATATC 1257623 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||| ||||| || |||||||| Sbjct 1257624 CAGAAGGAGTCCACCCTTCACCT 1257646 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 204767 AGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGC 204826 |||||||| || ||||| ||||||| ||| ||||| | || || | |||||||||||| Sbjct 1257646 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 1257587 Query 204827 TGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| ||||| |||| Sbjct 1257586 TGCTTTCCGGCAAAGATCAGCC 1257565 >seq9982 Length=962 Score = 84.2 bits (92), Expect = 5e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| |||||||| |||||||||| || ||||| | || || | ||||||||| Sbjct 929 ACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 870 Query 204824 AGCTGCTTT-CCGGCGAAGATAAGCC 204848 ||||||||| ||||| ||||| |||| Sbjct 869 AGCTGCTTTGCCGGCAAAGATCAGCC 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181508388626072