Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq110 223 3e-53 seq176 116 4e-21 seq9982 84.2 2e-11 >seq110 Length=1641499 Score = 223 bits (246), Expect = 3e-53 Identities = 985/1532 (64%), Gaps = 38/1532 (2%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 1622889 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 1622830 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || |||||| ||||| | Sbjct 1622829 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 1622770 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| | ||| || ||||||| || || ||||||||| Sbjct 1622769 AGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTT-CCAGTCCCA 1622711 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | |||||| | |||||||||||||||||| | || ||| |||| Sbjct 1622710 AAGGTCG--GTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGC 1622653 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAG 147188 ||| || |||| |||| ||| || ||||| | | || ||||| ||||| || Sbjct 1622652 GAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAG 1622594 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || |||| || | ||||| || || Sbjct 1622593 GGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTC 1622534 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | || |||| || | ||||| ||||||| |||||||| |||| ||||| || Sbjct 1622533 GAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGG 1622474 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 | || | |||| || ||| | | || |||| |||| || || || Sbjct 1622473 CCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGAT 1622414 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||||||||| ||| | || || || | | || |||| ||| || |||| Sbjct 1622413 CTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGT 1622354 Query 147429 CCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 || ||| || |||||| || ||| | |||||| || ||||| |||||||||||| Sbjct 1622353 CCGCTCTGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCA 1622298 Query 147488 TCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTC 147547 ||| || | | |||||| ||| | || | ||| ||||||||||| || ||| | Sbjct 1622297 CCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGC 1622238 Query 147548 CCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 147607 ||| || ||||| ||||| ||||| ||||| ||||| ||| |||||||||| || | Sbjct 1622237 CCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCC 1622178 Query 147608 CGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC--TC-GCACCCGC 147663 |||| ||| || | || | ||| | || || | |||||| || ||||| | Sbjct 1622177 CGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGCCTTCACCACCCTC 1622119 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 | | | || || || || || ||| | | ||| ||||| || || || Sbjct 1622118 TTC---ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAG 1622062 Query 147724 CAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 || ||| | || || ||||| | | || |||||||||| ||||| | || | Sbjct 1622061 CACTCGTCCAGCCCAGGACATTCGCTG-GGACACATCAAGGACCAGTCCTGGTTGCTCTC 1622003 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTG 147840 || | ||| ||||| || || | ||||| ||||| | ||| || | || || || Sbjct 1622002 CACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTG 1621943 Query 147841 CAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAG 147900 | ||||| || |||| |||| | || | | | | |||| |||||| Sbjct 1621942 C--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCAT 1621885 Query 147901 GGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGC 147957 || || | || | ||| | || || | | || |||||||||||||| | || Sbjct 1621884 GGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGA 1621825 Query 147958 ACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAA 148017 | ||||||| | || | || ||| || ||| ||| | | ||||||||||| Sbjct 1621824 GCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCT 1621765 Query 148018 TTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTAC 148077 ||| | ||| || | ||| | | ||| ||||| || ||||| || || Sbjct 1621764 GCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGAC 1621705 Query 148078 TTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTG 148137 || || ||| ||||| | || || ||||||||| ||||||||||||| || Sbjct 1621704 TTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 1621645 Query 148138 ACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCG-AGAAAAGG 148194 | | | |||| || || ||| ||||| ||| | ||||| || ||| ||| Sbjct 1621644 ATGGCGAGCAGGAAGCAACTGGACAGCTGCGG---CCGGTTGGTCCCGGCGTTGAAGAGG 1621588 Query 148195 GTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCT 148254 || ||| ||||| || ||| | || | || | | || ||||| | ||| | Sbjct 1621587 GTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCG 1621528 Query 148255 TCGATGTCGTCG-CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| ||| ||||| || || | || || | ||||||||||||||| ||||| || Sbjct 1621527 TCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTC 1621469 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 ||| |||| ||||||||| || || || | || || || ||| | || ||| | Sbjct 1621468 GGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAA 1621409 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 ||||| |||||| |||||| ||||| Sbjct 1621408 GTTGTAGGAGAAATCTCTGTCGTAAATGATGG 1621377 >seq176 Length=1137095 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| |||||||| || | | Sbjct 797695 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 797636 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| ||| ||| |||| Sbjct 797635 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACG 797576 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | |||||||| || | || | || || ||||| || ||||| Sbjct 797575 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTC 797516 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 797515 ACGAAAATCTGCAT 797502 >seq9982 Length=962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG-TTTACCGGA 131988 || ||||| || |||||||||||| || ||| || |||||| ||||| ||| |||| Sbjct 914 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGC 855 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||| || || || || ||||| || ||||| ||||| || | Sbjct 854 AAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTTGAC 795 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || ||| | || ||||| || | || | ||||||||||| || || || Sbjct 794 ATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTT 735 Query 132109 TATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 734 GACAAAGATCTGCATG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476488281971520