Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq15979 170 3e-36 seq434 170 3e-36 seq358 170 3e-36 seq17184 161 1e-33 seq6898 161 1e-33 seq110 145 1e-28 seq14846 129 8e-24 seq196 120 4e-21 seq233 95.1 2e-13 >seq15979 Length=583 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| ||| |||| ||||| Sbjct 242 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 295 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | ||||||| || Sbjct 296 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 355 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| || | | ||||||||||||||||||||| Sbjct 356 CTGGCTCACTACAACAAGCGCTCCACCATCAGCTCCAGGGAGATCCAGACCGCCGTGCGC 415 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 416 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 464 >seq434 Length=359018 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 129065 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 129118 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| | || ||||||| | ||||||| || Sbjct 129119 AGCATCATGAACTCGTTTGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 129178 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 129179 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 129238 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 129239 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 129287 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 144721 TCTACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCA 144668 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| | || ||||||| | ||||||| | Sbjct 144667 TGAGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCC 144608 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||| Sbjct 144607 GTCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGC 144548 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 144547 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 144497 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 147052 TCTACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCA 146999 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| | || ||||||| | ||||||| | Sbjct 146998 TGAGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCC 146939 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||| Sbjct 146938 GTCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGC 146879 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 146878 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 146828 >seq358 Length=502766 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 399280 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 399227 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | ||||||| || Sbjct 399226 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 399167 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 399166 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 399107 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 399106 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 399058 >seq17184 Length=549 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| || |||||||| | ||||| Sbjct 422 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCG---GGATCTCCTCCAA---GGCCATG 369 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 368 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 309 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 308 CTGGCTCACTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 249 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 248 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 200 >seq6898 Length=2146 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 1122 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 1175 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 1176 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 1235 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | ||| ||| | | | |||||||||||||| |||||| Sbjct 1236 CTGGCTCACTACAACAAGAGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 1295 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 1296 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 1344 >seq110 Length=1641499 Score = 145 bits (160), Expect = 1e-28 Identities = 214/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | | ||||| || ||| ||||||| || | || || ||||| || ||| Sbjct 1621541 ACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCC 1621600 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || |||||| || ||||| ||| | | |||||||| ||| ||| Sbjct 1621601 GGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATC 1621660 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| || ||||||||||||||||| |||||| | || ||||| ||| Sbjct 1621661 GAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATC 1621720 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || | | | || | | || |||| | || |||||||||||| | Sbjct 1621721 GGCGTGGCGGTGAGCTGCATCCGATCGACAGGAAGCTACATCGCAGGCACCAACGGCAAC 1621780 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||| ||||| | |||| ||| |||| || || |||||||||||| Sbjct 1621781 TCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAG 1621840 Query 260183 TGC 260185 || Sbjct 1621841 GGC 1621843 Score = 109 bits (120), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||||| |||||||||||| | || | |||||||||||||||| |||| | Sbjct 1622766 TGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 1622825 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| ||| |||||||||||||| ||| | ||||| || || || || | | Sbjct 1622826 TCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCG 1622885 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| ||||| ||||| || || |||||||||||||| Sbjct 1622886 TCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGA 1622930 Score = 107 bits (118), Expect = 3e-17 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||| ||||| || ||||||||| ||||| Sbjct 1622138 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTAC 1622197 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||||| ||||| || ||||||||||||||||||||||||| | || | ||| Sbjct 1622198 AAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1622256 Query 262210 CCTGTGCACCGAG 262222 ||| ||||| ||| Sbjct 1622257 CCTCTGCACGGAG 1622269 >seq14846 Length=623 Score = 129 bits (142), Expect = 8e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 ||||||||||| | || ||||||| | |||||||| ||| ||||| | || ||||||| Sbjct 1 GTCAACGACATTTTTGAGCGCATCGCCTCCGAGGCCTCTCGTCTGGCTCACTACAACAAG 60 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| ||| ||| | | | |||||||||||||| ||||| || | ||| |||||| Sbjct 61 CGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGGCTCCTGCTGCCCGGCGAG 120 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| ||||||||| || |||||||||| Sbjct 121 CTGGCCAAGCACGCCGTGTCTGAGGGCACCA 151 >seq196 Length=1053469 Score = 120 bits (132), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| || |||||||| || || |||||| || |||| || |||| |||||| || Sbjct 129035 CCATGAGTATAATGAACTCCTTCGTGAACGACCTGTTCGAGCGAATCGCCACCGAAGCGT 129094 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||| || | | ||| |||||| ||| ||| || | ||| | |||||||||| Sbjct 129095 CTCGCCTTGCTCAGTACAATAAGCGCGTCACCATCACCAGCAGGGAGGTGCAGACCGCCG 129154 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 129155 TCAGACTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 129208 >seq233 Length=880882 Score = 95.1 bits (104), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | | | ||||| || || | ||||| | | || ||||| |||||||||||| Sbjct 604490 CGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCC 604431 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| | ||| || ||||||||||||||| ||||||| || Sbjct 604430 ATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCCC 604371 Query 1456072 GTCGAGA 1456078 ||||| Sbjct 604370 AGCGAGA 604364 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 605814 GAGCCTCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 605755 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 605754 ATCTGGCAGATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACGGCAGAGGAGGT 605702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175821205678384