Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq54 122 8e-23 seq9982 118 1e-21 seq4001 84.2 2e-11 >seq54 Length=2421293 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 1257632 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 1257573 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 1257572 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 1257513 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||||||||||| ||||| ||||| || || | |||||||| Sbjct 1257512 CTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCAC 1257453 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1257452 AAAGATCTGCAT 1257441 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| || | || |||||||| || || ||||| Sbjct 1259640 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 1259581 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| || ||| ||| || ||| | | Sbjct 1259580 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTC 1259521 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | ||||||||||| ||||| ||||| || || | || || ||| Sbjct 1259520 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 1259461 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 1259460 AAGATTTGCAT 1259450 >seq9982 Length=962 Score = 118 bits (130), Expect = 1e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCG-CAAA 35604 || || || |||||||| |||| || ||| || | || ||||||||||| ||| |||| Sbjct 911 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAA 852 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||| ||| ||| || ||| | | | Sbjct 851 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTTGACATT 792 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| ||||| |||||||| || | || || || Sbjct 791 CTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGAC 732 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 731 AAAGATCTGCAT 720 >seq4001 Length=6841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 6698 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 6757 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||| ||| |||||| ||| | | | Sbjct 6758 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATT 6817 Query 35665 TGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| | ||||| Sbjct 6818 CTCAATGGTGTCGCTGGGCTCCAC 6841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450677340330560