Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq110 149 6e-31 seq176 123 3e-23 seq54 122 9e-23 seq9982 107 2e-18 >seq110 Length=1641499 Score = 149 bits (164), Expect = 6e-31 Identities = 907/1433 (63%), Gaps = 38/1433 (3%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| |||||||| || || || ||| || |||||||| || | || Sbjct 1621438 CTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGT 1621497 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | |||| || || ||||| |||||| ||||||||| | || || ||| | | |||| Sbjct 1621498 GTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTC 1621557 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || ||| || || ||| ||| || Sbjct 1621558 GGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCA 1621617 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 1621618 GCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 1621677 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 ||| | ||||| |||||||| | || ||||| || || || || | | Sbjct 1621678 CCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTG 1621737 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||||| ||||||||| || ||| ||| || | ||| Sbjct 1621738 CATCCGATCGACAGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCC 1621797 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 ||| || | || | ||| ||| | | || | || |||||||| || ||| | Sbjct 1621798 GATGCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACC 1621857 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| ||| ||||||| |||||| ||| | | | | || | || Sbjct 1621858 CGGGGCCTTCGCCATGTATCTGGAGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCT 1621917 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| || || || ||| | ||| | || || |||| || |||||| Sbjct 1621918 GAAGAAGAACACAGGAAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTACGCCTTGTGGA 1621976 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | ||||| | ||||| ||| Sbjct 1621977 TCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC- 1622035 Query 8120 ATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | || || ||| | | | | || | || || | | |||| || Sbjct 1622036 AGCGAATGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAA 1622095 Query 8179 TACGAACACG-ACGGCGCGTACGTGCGGCAAGTGAAAGCGC-GC-GACCTGCACCGCGCC 8235 || || | | | || | || | || ||||| |||| || | ||| ||| | Sbjct 1622096 TATGAGAAGGAAGGGAGAGT-GAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGC--C 1622152 Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 || ||||| | || | ||||||||| | || |||||||| ||||| |||||||||||| Sbjct 1622153 ATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAAC 1622212 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 || ||||| || ||| |||||||||| |||||||| || ||| | || | Sbjct 1622213 CGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTG 1622272 Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAAC 8415 || |||||| | ||||| |||||||| ||||| || || || | | ||| Sbjct 1622273 GTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAAC 1622332 Query 8416 GCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGT-- 8471 || ||| |||| | | |||| |||| || || || | | |||| Sbjct 1622333 ATGTACGT-----CACGCCAGAGCGGACTTTCGAC-TTCAAGAA--GCTGGCCTCCGTCA 1622384 Query 8472 GCAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530 ||| || | || || | | ||||| || |||| | || || | | Sbjct 1622385 CCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTTCCTG 1622444 Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 ||||| || |||| ||||||||| || | || | ||||| || |||||||||| Sbjct 1622445 AAGCGGAGACTTCCAACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCG 1622504 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 |||| || | || |||| | ||| | |||||| | ||||| | |||||||||| Sbjct 1622505 ACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCC 1622564 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAAT 8710 | || || || | || ||| ||| | || |||||||| | || ||| ||| Sbjct 1622565 AGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGC 1622624 Query 8711 TGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACA 8770 | ||| | ||||| |||||| |||| || | |||| || || | || ||||||| Sbjct 1622625 TCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACA 1622684 Query 8771 TGTGGAATGTCACGCCCACC--TCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 ||||| | ||||| ||| ||||| ||| | | ||| |||| | |||| | Sbjct 1622685 TGTGGGAGAAGACGCCGACCGACCTTTG-GGACTGGAAGC-TGCTGAA--GGAAAA--GA 1622738 Query 8829 TC----AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTG 8884 || || ||| || | || ||| || |||| ||||||||| || | || | Sbjct 1622739 TCAGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCG 1622798 Query 8885 CTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || || |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 1622799 CCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 1622851 >seq176 Length=1137095 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| || || || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || ||||| ||| || || || | || || | ||||| Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| |||||||| ||||| || Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq54 Length=2421293 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || |||||||| || || |||||||||||| Sbjct 1259676 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1259617 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 1259616 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 1259557 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || ||||| ||||| || | |||||| | |||||| Sbjct 1259556 ATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACC 1259497 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | || || || || |||||||| Sbjct 1259496 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 >seq9982 Length=962 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || || ||||| || || |||||||||||| Sbjct 947 CCACCCCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 888 Query 134547 ACGGTGTGAGAGTCGTCGAGCTG-TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||| |||||| ||||| |||| | |||||| || || || Sbjct 887 AGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 828 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || ||||| ||||| || | |||||| | |||||| Sbjct 827 GATGCCCTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCAC 768 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||||||||| || | || || || || || ||||| || Sbjct 767 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505268057752640