Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 2e-13 seq29 86.0 9e-12 >seq57 Length=2403620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 214104 TGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACA 214163 |||| || ||||| || || ||| ||||||||| ||||||||||| ||||||||| Sbjct 1623300 TGTTCGGGCTCGTCCCAGGCCTCACCATGTACGCCACCATCTGGCTGAGGGAGCACAACC 1623359 Query 214164 GGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| || ||| | |||||| || || ||| ||| | ||||| ||||| ||||||| Sbjct 1623360 GGGTGTGTGACATCCTGAAAGGCGAACATCCGACCTGGGATGACGAGCAGCTTTTCCAGA 1623419 Query 214224 TCACTCGTTTAATCATTA 214241 ||| | | ||||||| Sbjct 1623420 CCACCAGACTTATCATTA 1623437 >seq29 Length=3056709 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 214094 GGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGA 214153 ||| | ||| |||| || ||| | |||||||| ||||||||| | ||||| || Sbjct 1636137 GGTCAGGAGGTGTTCGGGCTCCTTCCCGGTTTGGGTTTGTACGCCACACTGTGGCTCAGG 1636196 Query 214154 GAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAG 214213 ||||||||||| || || ||||| |||||| |||||| || ||| |||| || ||| Sbjct 1636197 GAGCACAACAGAGTCTGTGACGTCCTGAAAGCAGAGCATCCTACCTGGGACGATGAGCAG 1636256 Query 214214 CTGTTCCAGA 214223 || ||||||| Sbjct 1636257 CTTTTCCAGA 1636266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723154250407680