Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq110 390 2e-103 seq784 100 4e-16 seq17 87.8 2e-12 >seq110 Length=1641499 Score = 390 bits (432), Expect = 2e-103 Identities = 1266/1951 (65%), Gaps = 21/1951 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | |||||| | | | | ||||| || || || Sbjct 1622946 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 1622887 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||| || || ||||| || || ||||| || | || Sbjct 1622886 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 1622827 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 1622826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 1622767 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | |||| || || || || | ||||| |||||||| Sbjct 1622766 AGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 1622707 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 1622706 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 1622647 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | | || || || || || ||||| | || || Sbjct 1622646 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 1622587 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 | || || || ||||| |||| | ||||| || ||||| |||| ||||| || Sbjct 1622586 TGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGGG 1622527 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | | | || || || || || |||| ||||| || || || ||||| || || || Sbjct 1622526 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 1622467 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || ||| | || ||||| |||| || || || || || || || || || || Sbjct 1622466 CGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 1622407 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || ||| || | ||| || ||| || || || || || |||| || Sbjct 1622406 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTC 1622348 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || || || || || || ||||| | Sbjct 1622347 TGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTT 1622288 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | || | | | ||| || || || || || || ||||| || ||||| || || Sbjct 1622287 GCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTG 1622228 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| ||| || ||||||||||| || || | || || || ||||| | Sbjct 1622227 CTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGT 1622168 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||| | | || || | || |||| || || Sbjct 1622167 CTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTC--ACTCTC 1622110 Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | || || ||||||| || || ||| ||||| || |||||||| || |||| Sbjct 1622109 CCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGC 1622050 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||||||||| | ||||||||||| ||||| | | | || |||| ||||| Sbjct 1622049 CCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATG 1621990 Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || || || || ||||| | || || ||| || ||||||| ||| | || || ||||| Sbjct 1621989 AACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCC 1621931 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| || || || || || || ||||| | | || | |||||||| || ||||| || Sbjct 1621930 TGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACAT 1621871 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || |||| || || || ||||| || | ||| | || ||||| || || Sbjct 1621870 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTA 1621811 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 |||||||||||||| | | || || || || || || || || | || || ||||| Sbjct 1621810 AACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC 1621751 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | | | || || || | | | || || || || || || || || || || Sbjct 1621750 TGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGC 1621691 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | |||| ||||| || || || || ||||| || || ||||| || || || Sbjct 1621690 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 1621631 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 || || |||| || | | | || || || || || | || ||||| ||||| || Sbjct 1621630 GCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 1621571 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || || || ||||| || || | || | || || || | | || Sbjct 1621570 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTG 1621511 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | || || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 1621510 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGAT 1621451 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||| |||||| || |||||||| || || || || ||||||| || || ||||| Sbjct 1621450 CTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 1621391 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACAG 70264 |||||||| || || || || ||||| | || | || || || | | | Sbjct 1621390 GTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCTG 1621331 Query 70265 TAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | ||||| || ||||| ||||| || ||| || |||||| ||| | | Sbjct 1621330 CTTG-GAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAACAGGT 1621275 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 | ||||| || || || || | || || || ||||| || | || || | ||| || | Sbjct 1621274 CCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCC 1621215 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 | || || || || || ||||| || |||| || || || || || || ||||| | Sbjct 1621214 TCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCG 1621155 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| |||| || | || || || ||| | || | || || || || ||||||| Sbjct 1621154 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGG 1621095 Query 70502 CTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGA 70560 || | ||||| | || || | |||||| || || || || |||| || || Sbjct 1621094 TGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 1621036 Query 70561 GATGTAATTTTATCAAACATAACATTCTCCT 70591 || || |||||||||||||| || ||||| Sbjct 1621035 GAGGTGATTTTATCAAACATGACGCGCTCCT 1621005 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || ||||| || |||| || || || || || | Sbjct 1623244 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 1623185 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || |||||||| ||||| | ||||||||||| || | | ||| Sbjct 1623184 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 1623125 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || | |||||||| Sbjct 1623124 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 1623076 >seq784 Length=80426 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || ||||| | |||||||| || ||||||||||| || || |||||||| ||| Sbjct 25647 GTGCCAGCGTTAAACAGGGTAGGAGAGGCATGAGTGAACCACTTCTCTGAAAGCAGGTTG 25706 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||| ||||| || || || | | |||||| || | || || | ||||| | Sbjct 25707 TATGTTTCAACAGCTGCCTCAATGTCTCCTTTATGAATCCCGACTGCCACTCTCATCAGC 25766 Query 70111 ATATGCTGAGGTC 70123 || ||||| |||| Sbjct 25767 ATGTGCTGGGGTC 25779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || | ||||| || |||||||||||||| || |||| || Sbjct 23900 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 23959 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || |||| ||||| || || |||| || ||||| || Sbjct 23960 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGAT 24018 >seq17 Length=3631609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | |||||| || | || || || ||||| || || | ||| | Sbjct 3277046 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 3276987 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || ||||| || || || || ||||| || || || ||||||||||| | Sbjct 3276986 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 3276927 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||| | ||| || Sbjct 3276926 CCACAAGACGCTCCCC 3276911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686731646220480