Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq28 100 2e-16 seq1015 87.8 1e-12 >seq28 Length=3093535 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 |||||||| ||||| ||| | || || ||||| ||||| |||| || | || | ||| Sbjct 1720051 TGTCAGTTCTACGTCTGCGACGGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGAC 1719992 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || ||||| || || ||||| || || ||||| || ||||| || ||||||||| Sbjct 1719991 ATGGGTCTGGGGGTGCCTTTCAACATCGCCAGCTATGCACTTCTCACCTACATGATTGCA 1719932 Query 41196 CACGTTAC 41203 ||| |||| Sbjct 1719931 CACATTAC 1719924 >seq1015 Length=58465 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| || | |||||| | || || ||||||||| ||||||||| || |||||| Sbjct 9363 CCAGACCACGTTCAGCTCAGAGTTCAGCCGGTCCAGCTCCATAAAGTCTTCTTTGTTGGT 9304 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | | |||| | | | | |||||||||||||||| | |||||| |||| ||||| | | Sbjct 9303 GATCGGACCGCCAGACTT-CAGCCTCCAGCCGTTCAGTTTCCAGGTCTTCACCCAGGTGG 9245 Query 77430 TCACACC 77436 ||||||| Sbjct 9244 TCACACC 9238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397356058695160