Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq110 156 5e-33 seq784 100 4e-16 seq233 89.7 6e-13 seq17 87.8 2e-12 >seq110 Length=1641499 Score = 156 bits (172), Expect = 5e-33 Identities = 952/1497 (64%), Gaps = 54/1497 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | || || |||| |||||| |||||| Sbjct 1622944 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 1622885 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | || || | ||||||||| | ||||| | || | Sbjct 1622884 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 1622825 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 1622824 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 1622765 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | |||| |||||| || | | |||||| | | Sbjct 1622764 GCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 1622705 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| | ||| || Sbjct 1622704 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 1622648 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | || ||||| |||||||||| || Sbjct 1622647 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 1622588 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | | || ||||| || || | Sbjct 1622587 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGG 1622528 Query 111031 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 1622527 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 1622469 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || || | ||| ||| || || | || |||| |||| || Sbjct 1622468 GGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGT 1622409 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 1622408 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 1622351 Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 1622350 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 1622292 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 |||| |||||||| | | || || || | |||| | ||| || || |||| | Sbjct 1622291 CCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 1622232 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| ||||| |||||| |||||| || |||||||||||||||||||| ||||| || | Sbjct 1622231 TCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTT 1622172 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC 111448 | ||||| || | || || || | ||| | | | ||| || || | || | Sbjct 1622171 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTCACT 1622113 Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 111507 | || ||| ||| || || |||||||| || |||||||| ||| | || ||| Sbjct 1622112 CTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGTC 1622054 Query 111508 GAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCG 111564 || || || | || || ||||| | | ||||| | || || ||| || | Sbjct 1622053 CAGCCCAGG-ACATTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACTCT 1621997 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 ||||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 1621996 CTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTC 1621937 Query 111625 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | ||| ||| || | | ||| |||||||| | | || |||||||||||| | Sbjct 1621936 CTTTCCTGTGTT-CTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCA 1621878 Query 111684 GATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 |||| | |||| | || ||| | | ||||| || | || || || || Sbjct 1621877 GATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTACCGAGCG 1621822 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 1621821 GTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC---- 1621766 Query 111797 ATACGAGATTTATTGGCTCTCACATC--ATGGATGT-----GCATCCCAATACCCCCAGC 111849 | ||| | || || || ||| ||| | | || || || || ||||| Sbjct 1621765 -TGCGATGTAGCTT-CCTGTC-GATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGC 1621709 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 |||| || || |||| |||| | | || || | ||||| || | ||| ||| || Sbjct 1621708 GGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTC 1621649 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 111967 ||| |||||| |||||||||||||||| |||||| | ||| || || || |||||| Sbjct 1621648 CTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTTGAAG 1621591 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 112026 ||||| || | ||||| ||||| || | | |||| || ||| ||||| | | | Sbjct 1621590 AGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGC 1621532 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || |||||| ||||||||| || | | |||| ||||| ||||| ||| || Sbjct 1621531 GGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 1621475 >seq784 Length=80426 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 23875 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 23934 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 23935 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 23994 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 23995 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 24027 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 ||||| || | |||||||||| | || || | |||| ||||| || |||||| Sbjct 22677 GGAGAGCCAGCGTAGGTTTCATACGGGCCAAATTCTGCTGCCAGCTCACAACTGGCCTCC 22736 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 |||| |||| || |||||||||||||| || || | || |||||| Sbjct 22737 AGGGCGGCGTAGTAGATGGTTTCAAAGATGTGAATGTTGAGTAACTGGGCTTCTGGGCTT 22796 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||||| |||||| | ||||| |||| || ||||| || ||||| | |||||| Sbjct 22797 TCAAATGGGTAGCGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCGATTCCAATA 22856 Query 111083 GGTCTGTGTCGCATATTAGACTTT 111106 || ||||| ||| | || |||||| Sbjct 22857 GGCCTGTGACGCTTGTTGGACTTT 22880 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| ||||||||| |||| | | ||||| ||||||||||| || || ||||| Sbjct 22289 GTAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGA 22348 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||||| |||||||| |||| | | |||||| Sbjct 22349 AGCTGTGGGCATTGGGGCCAAAAGCAAACTGTT 22381 >seq233 Length=880882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 596174 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 596115 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 596114 AAGTCGAACGGGTTCTCCG 596096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || | |||||| ||||| Sbjct 603153 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAAAGAAATGTTCTCCATG 603212 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 603213 AAGTCGAACGGGTTCTCCG 603231 >seq17 Length=3631609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| ||||| || ||| || || ||||||||||| || | ||||| Sbjct 3277046 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 3276987 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 3276986 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 3276927 Query 122798 CAAAAAGGCGTTC 122810 | | ||| || || Sbjct 3276926 CCACAAGACGCTC 3276914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627870030547200