Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq110 167 3e-36 seq784 95.1 1e-14 seq17 89.7 6e-13 >seq110 Length=1641499 Score = 167 bits (184), Expect = 3e-36 Identities = 891/1397 (64%), Gaps = 40/1397 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 1622850 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 1622791 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || || || |||| Sbjct 1622790 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCC 1622731 Query 118302 TTGAG-AGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| ||| |||| | || | | |||| | || ||||| || |||| Sbjct 1622730 TTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTG 1622675 Query 118358 GAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 |||||| || | | |||| ||||| ||||| | ||||| || ||||| | | Sbjct 1622674 GAGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCG 1622617 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | ||| |||| ||||| ||||| ||||| || || || || || || | || Sbjct 1622616 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 1622557 Query 118476 ATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 | || || ||| ||| | | |||| | | || || || || | || || | Sbjct 1622556 AGCAGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 1622499 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA 118593 |||| ||||| |||| || || || | || | | | || || || || | Sbjct 1622498 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAA 1622439 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 1622438 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 1622379 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 ||||| | | | || ||| | || |||| |||| ||| | ||||||| Sbjct 1622378 AGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGA 1622322 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || ||||| || || || | ||| ||||| |||||||| | | ||||||| Sbjct 1622321 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 | | ||| | ||| |||||||||| ||||| || || ||| ||| || || | Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 ||||||| |||||||| || ||||| || || || ||||||| || || || | ||||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 1622142 Query 118894 CAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGG 118952 | | || || || | || ||| ||| || | ||| || || |||||||| Sbjct 1622141 GCTGCTGCGCCTTCACCACCCTC-TTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 1622083 Query 118953 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAG 119011 || ||||| || ||| | ||| ||||| || | || ||||| || | | Sbjct 1622082 TTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGA-CATTCGCTGGGACACATCAA 1622024 Query 119012 AGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 1622023 GGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 1621966 Query 119070 GAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| || || | | | ||| || | | || || || || ||||| || Sbjct 1621965 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAA 1621907 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGAC 119184 || | | || |||||| || ||||| |||| |||| | ||| || | Sbjct 1621906 CTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTT 1621847 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| || |||| || ||| ||| | || | ||||| || | | | Sbjct 1621846 G-CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 1621788 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGACATCGTGGAT 119302 | | ||| | ||| || || || || || ||| || | || || | | Sbjct 1621787 CGTTGGAGTTGCCGTTGGTGCCTGCGATGT-AG-CTTCCTGTCGATCGGATGCAGCTCAC 1621730 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || || || || || || |||| || || ||||||||| | | || || |||| Sbjct 1621729 CGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTA 1621670 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || ||||| ||| |||| | |||| |||||||| || |||| || |||| Sbjct 1621669 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCG 1621610 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 | || || ||||||||||| || || | |||||| ||||| || | | |||| Sbjct 1621609 GTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGA 1621551 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || ||||||||| | | ||||| |||||| |||||| || || | ||| |||| || Sbjct 1621550 GGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCA 1621491 Query 119542 TAAACATGTATTGGGGT 119558 | | ||||| || ||| Sbjct 1621490 TGAGCATGTGCTGCGGT 1621474 >seq784 Length=80426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 22290 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 22349 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || | ||||| Sbjct 22350 GCTGTGGGCATTGGGGCCAAAAGCAAACTGTT 22381 >seq17 Length=3631609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 |||||||| || ||| || || ||||||||||| || | |||||||| |||| | || Sbjct 3277032 ATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 3276973 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 3276972 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 3276914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618275705561920