Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq110 131 2e-25 seq233 82.4 9e-11 >seq110 Length=1641499 Score = 131 bits (144), Expect = 2e-25 Identities = 898/1413 (64%), Gaps = 74/1413 (5%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| |||||| || | | | Sbjct 1621475 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 1621534 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 1621535 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 1621593 Query 104341 CAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || |||||||||||||||| |||||| ||||| Sbjct 1621594 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 1621651 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 1621652 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 1621711 Query 104459 GGGGGTATTGGGATG-----CACATCCAT--GATGTGAGAGCCAATAAATCTCGTATTCG 104511 || || || || || | | ||| ||| || || || | ||| | Sbjct 1621712 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGAT-CGACAG-GAAGCTACATCGCA---- 1621765 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || | || | || | | || ||||| | || | ||| ||| Sbjct 1621766 -GGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACAC--- 1621821 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTG 104624 |||| ||| || | | ||||| | | ||| || | |||| | ||||| | Sbjct 1621822 -CGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGG 1621880 Query 104625 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGG 104684 ||||||||||| || | | |||||||| ||| || ||| ||| | |||| Sbjct 1621881 AGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGG 1621940 Query 104685 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 || | | | | || || |||| ||| | ||||| || || || ||||||||||||| Sbjct 1621941 AGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGAG 1622000 Query 104745 TTGAGGAGAGTGGC---AATTGGTCTCTCTTTTGT-CCAGACAAGGCACCTGGTCTCTCC 104800 | |||||| | | ||||| | | ||| |||| || | ||||| || | Sbjct 1622001 T---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAATG-TCCTGGGCTGGAC 1622056 Query 104801 GA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 || ||| | ||| |||||||| || || ||||| || || ||| | ||||| | | Sbjct 1622057 GAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGT 1622115 Query 104860 GACTGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 104918 || | |||| || || | | | ||| | || || || |||| || ||||| | Sbjct 1622116 GAAGAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAA 1622174 Query 104919 CTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 104978 | || || || |||||||| ||||| ||||| || |||| ||||| || || |||| Sbjct 1622175 CCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACC 1622234 Query 104979 TGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 |||| |||||| | ||| ||||| || || | |||| | || ||| || | Sbjct 1622235 TGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGACG 1622294 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 || ||| || || ||||| || || ||||| ||| || ||| || |||||| Sbjct 1622295 AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---C 1622351 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 ||| || || | | || || | || || || || |||||||| |||| Sbjct 1622352 GGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACA 1622411 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG-CTCGTAAA--TCTAATATGAGAC 105215 | || || | || | ||||| ||| ||| || | | || || | | | | Sbjct 1622412 AGATCATCGACATCAACTACTACCCGGTT---CCTGAAGCGGAGACTTCCAACAAGCGCC 1622468 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG 105275 || | || || || |||| || |||||||| || || | ||||| || || ||| Sbjct 1622469 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACC 1622528 Query 105276 CATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 | || | | ||| |||||| || |||| | || || |||||||| || || Sbjct 1622529 CGTTCGAAAGTCC--CGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCA 1622586 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTT---GGCAGAGGTTGATGGTCCATATGAAACCTT 105390 |||||| || ||||| || | ||| | |||||| | || || || || || | Sbjct 1622587 CGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCT---CGGCCCCTACGAGACGTA 1622643 Query 105391 TGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AG 105445 ||||| || || | ||| |||||| | || || | || |||||| |||| | | Sbjct 1622644 CGAGGGCTCGCC--CGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCG 1622701 Query 105446 ACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 ||| | ||| | |||| ||||||| || |||||| |||| | | || | | Sbjct 1622702 ACCGACCTT---TGGGACT-GGAAGCTGCTGAAGGAAAAGATCAGCAAACACGGCGTGAG 1622757 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||||| || || |||| || ||||| || || |||||||| || ||| |||| || || Sbjct 1622758 GAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAA 1622817 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || | | | || | ||||| | |||||||| Sbjct 1622818 CGAGTCCATCGAGGCGTACACCAGCAACATCTA 1622850 >seq233 Length=880882 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||| ||| | | || | ||||| |||||| |||| Sbjct 604092 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 604033 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||| ||||||||| ||| || ||||||| Sbjct 604032 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 603983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583110377039680