Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq110 434 1e-116 seq17 100 3e-16 seq233 98.7 1e-15 seq784 93.3 5e-14 >seq110 Length=1641499 Score = 434 bits (480), Expect = 1e-116 Identities = 999/1489 (67%), Gaps = 47/1489 (3%) Strand=Plus/Minus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 |||||| || ||||| |||| | || |||||| |||| ||| || ||| | Sbjct 1622910 AGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 1622851 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 ||||||||| | ||||||| ||||| | ||||||||| |||| |||||||||||| || Sbjct 1622850 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 1622791 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || || |||||||| || | ||| || |||| | || || | |||||| || Sbjct 1622790 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCC 1622731 Query 78655 TTTAG------GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGG 78708 || || | |||||||| || ||| || || |||||||||| || ||| Sbjct 1622730 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGG 1622671 Query 78709 ATACCCT--CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 || |||| | |||| ||||| |||| | |||||||||| | || ||| ||||| Sbjct 1622670 ATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGA 1622613 Query 78767 GTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGA 78823 | ||||| | ||| |||||| |||||||| | | ||||||||| |||||| Sbjct 1622612 GCTCGCAGCTGGCCTC---CAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 1622556 Query 78824 GCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGC 78883 || | || | || ||||||| | | | || |||||| | |||||||| | Sbjct 1622555 GCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 1622496 Query 78884 CCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGG 78940 ||||||||||||| ||||||| | ||||||| ||||| ||| |||| || | Sbjct 1622495 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCT------CCGCTTCAG 1622442 Query 78941 ---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCA 78997 |||||| |||| ||||||| ||| ||||| | || ||| || | Sbjct 1622441 GAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGA 1622382 Query 78998 CCTCGTACAATTTGGCGAAATCAAAA---TGATTTCCTTTGATGAAAGTCGGTAGGCACA 79054 | | || || ||| || ||| | | | ||| | | | ||| | Sbjct 1622381 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGA 1622322 Query 79055 GCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGC 79114 || ||||||||||| |||||| ||||||| ||| | ||| | | || |||| Sbjct 1622321 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 1622262 Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 | | || ||||||||||||| | ||||| ||||||||||||| ||| || |||| Sbjct 1622261 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 1622202 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234 |||||||| |||||| || |||||||| || ||| || || | | ||| ||||| Sbjct 1622201 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 1622142 Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC--GACGTACGTCCGGTACAA 79292 | | | ||| || ||| |||| || |||| | | | || | ||| | Sbjct 1622141 GCTGCTGCGCCTTCACCACCCTCTT-CACTCTCCCT-TCCTTCTCATATTTGGTGTAGAG 1622084 Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 || | ||| |||| || || ||| ||| || || || ||| || ||||||| Sbjct 1622083 CTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCAA 1622024 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 | |||||||| || |||| || ||| |||||| ||||| |||||||||| ||| Sbjct 1622023 GGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTA 1621964 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 ||| ||||| | | | | |||||| | || |||| |||||| || || || Sbjct 1621963 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTC 1621904 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | | |||| |||||| ||||||||||| |||||||| | || | |||| ||| Sbjct 1621903 AAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCC 1621844 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 |||||||| ||||||||| || ||||||||| |||||| ||||| ||||| | |||| Sbjct 1621843 GCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTT 1621784 Query 79593 GGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG-GA 79651 || | |||||| || || ||| | || ||| || ||| | || | | Sbjct 1621783 GGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATG-CAGCTCACCGCCA 1621725 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 ||||| || || | ||||||| ||| ||||||||| ||| || || |||||||||| Sbjct 1621724 CGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGC 1621665 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCG 79771 | ||||| |||||||||||| |||| ||||||||| || |||| ||| || ||| | Sbjct 1621664 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGG 1621605 Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGT 79831 | |||||||||||||||||||| | ||||| ||||| |||| | || || | || Sbjct 1621604 TCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGT 1621545 Query 79832 ACGTCTCCTTGACGCGCGG----GAGGTCGTCG-CCGTGGATGCCGACCGCGACGCGCAT 79886 | ||||| |||| |||| || ||| ||| |||||||| || |||| || | ||| Sbjct 1621544 AGGTCTC---GACG-GCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCAT 1621490 Query 79887 GAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 || | || ||| || |||| | || ||| || | |||| ||||| Sbjct 1621489 GAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGG 1621441 Score = 370 bits (410), Expect = 1e-97 Identities = 920/1385 (66%), Gaps = 25/1385 (2%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGG-CGACGACCTCCCGCGAGT 19161 || ||| || | ||||| | || |||| || ||||| || ||| ||| || || Sbjct 1621475 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA-GACATCGA-CGCCG 1621532 Query 19162 CCG-CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 ||| |||||| ||| |||| || |||||| ||||| ||||| | |||||||| | Sbjct 1621533 CCGTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCT 1621592 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| || ||| |||||| |||| || || ||||| | || |||||||| | Sbjct 1621593 TCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACG 1621652 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 ||||||| || ||||||||||| || || ||| ||||||||| ||| ||||||| | | Sbjct 1621653 ACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTG 1621712 Query 19341 GGGGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || ||||| | | || | ||||| |||| || | ||| || || Sbjct 1621713 GCGGGATCGGCGTGGCGGTGAGCTGC-ATCCGATCGACAGGAAGCTACATCGCAGGCACC 1621771 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| || |||| | || || ||||| | || | ||||||||| || ||||| Sbjct 1621772 AACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTAC 1621831 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| ||| | || | |||||||| || || |||||||||||| Sbjct 1621832 GTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGGAGCCATGGCAC 1621891 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 ||||| | || ||||| || ||| |||| || | |||||| | | Sbjct 1621892 TTCGACGTGTTTGAGTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCC 1621951 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 | ||||| ||| ||||||||||| || ||||| |||||| ||| || |||| || Sbjct 1621952 AGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAAC 1622011 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 | || ||| | ||||||| || |||||| ||||| || ||| || || ||| Sbjct 1622012 CAGGACTGGTCCTTGATGTGTCCCAGCGAATGTCCTGGGCTGGACGAGTGCTGGGGAGAG 1622071 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | |||| | || | ||| | || | | || | | |||| |||||| | Sbjct 1622072 GAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGAAGAGGGTGGTGAAG 1622131 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | ||||| || | || || | |||| ||| ||||| || || |||||| Sbjct 1622132 GCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATG 1622191 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 |||||||||||| ||| ||| || ||| ||||| | ||| | ||||||| Sbjct 1622192 CTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 1622251 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 |||||| || || || | ||||| ||| ||||||| ||||| || || Sbjct 1622252 AGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAAC 1622311 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCA 19994 ||||| ||| | ||| | | ||||| | || || |||||||| | Sbjct 1622312 CTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGA 1622369 Query 19995 AATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACT 20054 | || | || ||| ||| || | || || || ||||||| |||| Sbjct 1622370 AGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACT 1622429 Query 20055 TTTACCCGA---CCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCG 20111 |||||| | || |||| | | || || | ||||||| ||||||||| ||||| Sbjct 1622430 ACTACCCGGTTCCTGAAGCGGAG---ACTTCCAACAAGCGCCACAGGCCGATCGGGATCG 1622486 Query 20112 GCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGG 20171 |||||||||| |||||||||| ||||| || | | | | | ||||| |||| | | Sbjct 1622487 GCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGTCCCGAAG 1622546 Query 20172 CGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGT 20231 | | |||||||| ||||||||| || | |||||||| ||||| || | Sbjct 1622547 CTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCT 1622606 Query 20232 GCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGG 20291 |||| |||||| |||| |||||| |||||||||| | |||| ||||||| | ||| Sbjct 1622607 GCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGG 1622666 Query 20292 GTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC-CC 20345 | ||||||||| |||||||||| || || || ||||| | || | Sbjct 1622667 GCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCTTTGGGACTGGAAGCTGC 1622726 Query 20346 TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGA 20405 | |||| |||||| | ||||| | | ||| |||| | ||||||||||| | Sbjct 1622727 TGAAGGAAAAGATCAGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCA 1622786 Query 20406 CCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACA 20465 | || || |||||||||||| |||| ||||||||| | ||||| ||||||| | ||||| Sbjct 1622787 CGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACA 1622846 Query 20466 TCTAC 20470 ||||| Sbjct 1622847 TCTAC 1622851 >seq17 Length=3631609 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||||||| ||||| || || |||||||| ||||| ||| |||||| Sbjct 3276917 CGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCTATC 3276976 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| | Sbjct 3276977 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 3277036 Query 60102 CGGGACGAGG 60111 |||| |||| Sbjct 3277037 AGGGATGAGG 3277046 >seq233 Length=880882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || ||||| |||||||||||||||||||||||| Sbjct 603226 AACCCGTTCGACTTCATGGAGAACATTTCTTTGGAGGGGAAGACCAACTTCTTTGAGAAG 603167 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 603166 CGGGTCGGGGAGTA 603153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 596101 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 596160 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 596161 CGGGTCGGGGAGTA 596174 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| | || |||||||| || ||| | ||| Sbjct 604091 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 604032 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||||| ||| ||||||||| || ||| ||||||| Sbjct 604031 CTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 603983 >seq784 Length=80426 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||| | ||| |||||||||||||| | || | ||||||| ||||| | Sbjct 23900 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 23959 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||||||||| || ||||| Sbjct 23960 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 24000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548383335454080