Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq110 203 4e-47 seq233 93.3 5e-14 seq614 89.7 6e-13 seq117 82.4 8e-11 >seq110 Length=1641499 Score = 203 bits (224), Expect = 4e-47 Identities = 469/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 1621562 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 1621621 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 1621622 TCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 1621681 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 1621682 AAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGC-TGCAT 1621740 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 ||| ||| || | ||| || || |||||| | || | || | ||||| || Sbjct 1621741 CCGATCGACAGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGAT 1621800 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| | || | ||||||||| || ||||||||| ||||||| || ||| | || Sbjct 1621801 GCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGG 1621860 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | | |||||||| || || ||||| |||||| |||| | | ||||| || |||||| Sbjct 1621861 GGCCTTCGCCATGTATCTGGAGCCATGGCACTTCGACGTGTTTGAGTTCCTGGAGCTGAA 1621920 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| || | || ||| | | | | ||||| || ||| || ||||||| | Sbjct 1621921 GAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATCC 1621979 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | ||||| |||||| | | ||||||| || |||| |||| | ||||||| || | || Sbjct 1621980 CTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCG 1622039 Query 53745 AGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC 53803 | || || || || | | ||| || || |||||||| | || | || | || Sbjct 1622040 AATGTCCTGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATAT 1622098 Query 53804 GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | | || | |||| | ||| ||||||| || | ||| | || ||| || Sbjct 1622099 GAGAAGGAAGGGAGAGTGAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATC 1622158 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || |||| || || || || || |||||| ||||||||| | |||| |||| Sbjct 1622159 GAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAG 1622218 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||| ||||| | ||| |||||| | |||||| Sbjct 1622219 AGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 1622257 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 1622764 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 1622823 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 1622824 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 1622883 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||| ||| | || | | ||||||| | |||| || Sbjct 1622884 CGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 1622943 Query 55672 GA 55673 || Sbjct 1622944 GA 1622945 >seq233 Length=880882 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 603153 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAAAGAAATGTTCTCCATG 603212 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 603213 AAGTCGAACGGGTTCT 603228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 596174 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 596115 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 596114 AAGTCGAACGGGTTCT 596099 >seq614 Length=138510 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 14901 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 14960 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 14961 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCGAC 15019 Query 152148 AATCGT 152153 ||||| Sbjct 15020 GATCGT 15025 >seq117 Length=1551885 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| || ||||| ||| | || ||||| || || Sbjct 907574 GTGAAGATGTAACGGGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 907515 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| || Sbjct 907514 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACG 907455 Query 117425 ATCGT 117429 || || Sbjct 907454 ATGGT 907450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547074872993600