Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq110 246 3e-60 seq54 149 7e-31 seq9982 147 2e-30 seq784 104 3e-17 seq117 82.4 9e-11 >seq110 Length=1641499 Score = 246 bits (272), Expect = 3e-60 Identities = 847/1294 (65%), Gaps = 55/1294 (4%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| |||||| ||||| Sbjct 1622838 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 1622779 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCT 80511 || | | || ||| |||| || |||||| || |||| | ||| ||| | Sbjct 1622778 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTC 1622719 Query 80512 GA---CCAAAAATCAACCCCAACGCTGTGACCCCACATGTCGTGCTGCAAGATGCCCT-- 80566 | ||||| || | || | | |||||||||||| ||| | |||||||| Sbjct 1622718 CAGTCCCAAAGGTCGGTCGG--CG-TCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 1622662 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT-GGCCAGCTCACAC 80625 | |||| || || ||| || |||||||||| ||||| | ||| ||| ||||| || Sbjct 1622661 CTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGC-TCTGCGGCGAGCTCGCAG 1622605 Query 80626 ---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 | ||||| |||| ||||| || ||| ||| |||| |||| | | || Sbjct 1622604 CTGGCCTCCA---GGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CAGCTG 1622549 Query 80683 GCCTGTGGGTCGT-CGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAAC 80741 || ||| | | |||||| | ||||| ||||| |||| ||||| ||||| || Sbjct 1622548 AGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGAC 1622489 Query 80742 GCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAA 80801 |||||| ||||||| | |||||||||||| || ||| || || |||| ||||| | Sbjct 1622488 GCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTA 1622429 Query 80802 GTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC--CCGTG-TAACATCATGAAG 80858 ||| | ||||||| ||| ||||| | | || | || || | || || Sbjct 1622428 GTTGATGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGCCAG 1622372 Query 80859 TTTCTGAAAGTCGAA--TTGGTTCCC-CTTCAC--AAATGCCGGAAGGCTCAGGGACGCC 80913 |||| |||||||| | | || | | || | ||| | ||| | ||| ||| Sbjct 1622371 CTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG--AGGGCGATGGAGGCC 1622314 Query 80914 AGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 || ||||| ||||||||||| || || |||| ||| || | |||||||| | | Sbjct 1622313 AGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTA--CTCCACCACCTCCGTGCAGAGGT 1622256 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGT 81031 | |||| || || |||||||| | |||||| ||| ||||||||||||||||| Sbjct 1622255 TGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGT 1622196 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 || |||||| ||||| ||||| ||| ||| |||| || |||||||| ||| | || Sbjct 1622195 AGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCT 1622136 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCG 81150 ||||||| |||||| | | | | ||||| | |||| |||| ||| |||||| ||| Sbjct 1622135 GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTC-TCG 1622077 Query 81151 AACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 |||| | || || || | || || ||| | || ||||||| | |||| Sbjct 1622076 AACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACATCAAGGACCAG 1622017 Query 81211 TCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGG 81270 || || | |||| || ||||||||| |||||||||||| | |||| ||| ||| Sbjct 1622016 TCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGG 1621957 Query 81271 TCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATG 81330 || | | | | |||||| | || ||| || ||| || || || | | | Sbjct 1621956 TCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACG 1621897 Query 81331 TCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTGCGACGGCCACCC 81384 || ||||||||||||||||||| ||||| | ||| |||| ||| ||| Sbjct 1621896 TCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTG---TTGCCGCCC 1621840 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| |||||| || || || ||| | || | || ||| || | | || | || Sbjct 1621839 TGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAG 1621780 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCG--CGCACCTTGCTGATTGAAAGAC 81502 | ||||| || || |||| | | | || || || | ||| | | | | Sbjct 1621779 TTGCCGTTGGTGCCTGCGAT--GTAGCTTCCTGTCGATCGGATGCAGCTCACCGCCACGC 1621722 Query 81503 CGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCT 81562 |||| || || | |||| ||||| | || ||| | |||| ||| || || || || | Sbjct 1621721 CGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTT 1621662 Query 81563 CGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGC 81622 ||||||| || | |||||| | |||| ||| || || |||| ||| || | || | | Sbjct 1621661 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCC 1621602 Query 81623 CGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 |||| ||||| || || || | ||||| |||| Sbjct 1621601 CGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAA 1621568 >seq54 Length=2421293 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || |||||||| || || || || ||||| || | | Sbjct 1259450 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 1259509 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| ||||| || ||||| || || || |||||| Sbjct 1259510 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 1259569 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| || Sbjct 1259570 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1259629 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || |||||||| || || || || | ||||| | ||||| || Sbjct 1259630 ATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCA 1259679 >seq9982 Length=962 Score = 147 bits (162), Expect = 2e-30 Identities = 170/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || || || || || || ||||| || | | Sbjct 720 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGAACCCAGC 779 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| ||||| |||||||| || || || |||||| Sbjct 780 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 839 Query 27526 CAGCGTCTAATTTTTGCTGG-TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 840 CAGAGGCTGATCTTTGCCGGCAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 899 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||| || || ||| | ||||| | ||||| Sbjct 900 CATCCAGAAAGAATCTACTCTCCACCTTGTCCTTCGTCTCAGGGGTGG 947 >seq784 Length=80426 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || || || || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 23894 TCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 23953 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 23954 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 24013 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 24014 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 24048 >seq117 Length=1551885 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 907450 ACCATCGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 907508 Query 32185 TCT-GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||| || |||||||| || || || || ||||| || ||||| ||| |||||||||| Sbjct 907509 TCTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGACGCTGCCAGCCCCCGTTACAT 907568 Query 32244 CTTCACC 32250 ||||||| Sbjct 907569 CTTCACC 907575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570163316947840