Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq13117 127 8e-25 >seq13117 Length=709 Score = 127 bits (140), Expect = 8e-25 Identities = 308/464 (66%), Gaps = 3/464 (1%) Strand=Plus/Minus Query 2577 CCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCT 2636 || |||| || || | ||| ||||||| ||||| || || ||| ||||| || Sbjct 608 CCGAGCAGGCGCCGGTGGTTGAACCAGTCGACCCAGCGCAGGGTTTCCAATTCCAGCTCC 549 Query 2637 GCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTC 2696 | ||| | |||| ||||| | || ||||| |||||||| ||||||||| || Sbjct 548 TCGCGGCTGCGCCAGGAACGCCGGTGCACGACTTCCGCCTTGTAAAGTCCATTGATGGTC 489 Query 2697 TCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCT 2756 || || | ||||||||| || |||||||| || || || | | ||||| Sbjct 488 TCCGCGAGCGCGTTGTCGTAGGAGTCGCCGACGCTGCCGACCGACGGTTCGATGCCGGCC 429 Query 2757 TCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGG 2816 || || ||||| || || | ||||| || || || || ||||| || ||| Sbjct 428 TCGGCCAGCCGCTCGGTGTATCGGATCGACACGTATTGCGACCCGCGGTCGCTATGGTGG 369 Query 2817 AT--GGTGCCAGACG-GACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAAT 2873 | || ||| | || | || ||||| || ||||||||| || || || |||||||| Sbjct 368 ACAAGGGGCCTGCCGAGCCGGCGGGCGTGCAGCGCCTGCTCGAGGGCGTCGAGCACGAAC 309 Query 2874 GTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATG 2933 |||| | ||||| || | | ||| || ||||| | ||| | || || || Sbjct 308 TGGGTTTGCTGGGACGACGACAGCTTCCAACCGACGATTCGCCTCGCATAGACGTCGATC 249 Query 2934 ATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCAC 2993 | |||||||| ||| | ||||||||||| || ||| | || | || |||||| Sbjct 248 ACGAACGCCACGTAGGCAAAGCCCTGCCAGGTCGACACGAAGGTGTAGTCGCTGACCCAC 189 Query 2994 AGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTC 3037 |||||||| |||||||| || ||| || ||||| ||||| || Sbjct 188 AGCTGGTCGGGTCGTTCGGCGGTGAAATGCCGGTTCACGCGATC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203244880712560