Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq54 93.3 3e-14 seq176 89.7 3e-13 seq9982 84.2 1e-11 >seq54 Length=2421293 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || || || || || || || || || | ||||| || || Sbjct 1257643 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 1257584 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | | ||| ||||| || || | |||||||| || |||||| Sbjct 1257583 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 1257524 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | ||| || || | ||||| |||| ||| || ||||| ||||| Sbjct 1257523 -GCCTTAACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGT 1257465 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | ||||||||||| |||||||| ||| Sbjct 1257464 GAGGGTTTTCACAAAGATCTGCATCTTG 1257437 >seq176 Length=1137095 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | ||||| ||||| ||| |||||| || ||||| || || || Sbjct 797728 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 797669 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||| ||||| || || Sbjct 797668 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 797609 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || || |||||| | || ||| | ||| || || | |||||| Sbjct 797608 ATGCCTTCTTTATCCTGAATCTTT-GCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| ||| || || || || || | |||||||| ||||||||||| || Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq9982 Length=962 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | |||||||| || || || ||||| || || || Sbjct 947 CCACCCCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 888 Query 34540 AGTGTTCGCTCGTCTTCAAGTTG-TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || ||| |||||||| || | | ||| ||||| || || Sbjct 887 AGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 828 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| ||| | || || | ||| ||||| | |||| Sbjct 827 GATGCCCTCCTTATCCTGGAT-TTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCA 769 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || |||||||| || | || || ||||| ||||||||||| Sbjct 768 CCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314650460455256