Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq28 136 4e-27 >seq28 Length=3093535 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || || || || || |||||||| |||||||| | ||| Sbjct 1719930 TGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGCACCCCCAGACCC 1719989 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| |||||||||||||| |||| ||||||||| || Sbjct 1719990 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCC-GTCGCAGACGTAGAACTG 1720048 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| |||||||| | ||||| || Sbjct 1720049 ACAGAGGGCGTGGCAGGGGGGCAGCGCCATTATGGGGAGGTC 1720090 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| |||||| ||||||| || ||||||||| |||| Sbjct 1720090 GACCTCCCCATAATGGCGCTGCCCCCCTGCCACGCCCTCTGTCAGTTCTACGTCTGCGAC 1720031 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||| ||||| || || || || | |||||||| | |||||||| || Sbjct 1720030 -GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGGGTGCCTTT 1719972 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || || || || ||||| |||||||| || || Sbjct 1719971 CAACATCGCCAGCTATGCACTTCTCACCTACATGATTGCACA 1719930 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || || ||||| ||||| ||||| || || || || |||| ||| ||||||||| Sbjct 1720815 TACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCCCTCCTCC 1720874 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | ||||||| ||||| || ||||||| ||||||||||||||| Sbjct 1720875 CTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTC 1720934 Query 7019 ACCCC 7023 || || Sbjct 1720935 ACTCC 1720939 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || ||||||||||||||||| ||||||| || ||||| ||||||| | ||| ||| || Sbjct 1720939 GGAGTGAAGATCTGGGACGCCAACGGGTCCCGTGACTTCTTGGACAACCTGGGCTTCACA 1720880 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| ||| |||| || || || || ||||| ||||| ||||| || || Sbjct 1720879 GAGAGGGAGGAGGGGGACCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTCGGTGCA 1720820 Query 34442 GAGTA 34446 ||||| Sbjct 1720819 GAGTA 1720815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448146793127040