Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq176 109 4e-19 seq9982 87.8 1e-12 >seq176 Length=1137095 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||||||||| || || || ||||| || || || || || Sbjct 797499 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 797558 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| | | || ||| ||| || |||||||| | || || || Sbjct 797559 AGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGAC 797618 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| |||||||| |||||||| | ||||| | ||| ||| Sbjct 797619 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 797678 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 797679 AACATCCAGAAGGAGTCCAC 797698 >seq9982 Length=962 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || ||||| ||||| || || || || || Sbjct 717 AACATGCAGATCTTTGTCAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGAACCC 776 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | |||| | || || || || | || || || Sbjct 777 AGCGACACCATTGAGAATGTCAAGGCTAAAA-TCCAGGATAAGGAGGGCATCCCCCCTGA 835 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAA-CAACTGGAAGACGAACGCACTTTAGGCGATT 23785 || ||| | | || |||||||||||| || |||||||| | ||||| | ||| | Sbjct 836 CCAGCAGAGGCTGATCTTTGCCGGCAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACT 895 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||| || || Sbjct 896 ACAACATCCAGAAAGAATCTAC 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337924606641056