Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9982 116 9e-21 seq54 116 9e-21 seq4001 107 5e-18 seq20632 95.1 3e-14 >seq9982 Length=962 Score = 116 bits (128), Expect = 9e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| |||||||| |||| ||||| |||| || || | |||||| Sbjct 932 AGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 873 Query 225562 TCTAGCTGC-TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||| || || || ||||| || | || ||||| || || || || ||||| || Sbjct 872 TCCAGCTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 813 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| || |||||| || | ||||| || Sbjct 812 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGT 753 Query 225681 CTTGCCCGT 225689 || || || Sbjct 752 TTTACCAGT 744 >seq54 Length=2421293 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||||||||| |||| ||||| |||| || || | |||||| Sbjct 1259661 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 1259602 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| || | || ||||| || || || || || || || Sbjct 1259601 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 1259542 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || |||||||| || |||||| || | ||||| || Sbjct 1259541 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 1259482 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 1259481 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 >seq4001 Length=6841 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| |||||| |||| || || | ||||| Sbjct 6678 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCC 6737 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || ||||| || Sbjct 6738 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 6797 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||| ||| || |||||||| Sbjct 6798 TGGATCTTGGCCTTGACATTCTCAATGGTGTC 6829 >seq20632 Length=16646 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||| || || | || || ||||||||||| || ||||| ||| | ||||| Sbjct 5619 CCAAATCTACAATGTGATCGTCACAGCTCATGCCTTTGTAATAATTTTTTTTATAGTTAT 5678 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || ||||| || || || ||| | | || |||| ||||| || ||||| Sbjct 5679 ACCCATCATAATTGGCGGCTTTGGTAACTGACTAATCCCACTAATAATTGGCGCCCCTGA 5738 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || ||||| | | ||||| ||||| |||||| | || || || || || |||| Sbjct 5739 CATAGCCTTTCCCCGAATAAACAACATAAGCTTTTGACTCCTTCCCCCCTCATTTCTTCT 5798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192215957358608