Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq28 136 3e-27 seq3124 91.5 1e-13 >seq28 Length=3093535 Score = 136 bits (150), Expect = 3e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| | || Sbjct 1720825 CGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCCCTCCTCCCTCTCTGTGA 1720884 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||||| |||||||| ||||| | ||| |||||||||||||||||||| || || |||| Sbjct 1720885 AGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTCACTCCTTTCT 1720944 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | || ||||| |||| ||||| || || Sbjct 1720945 CTGACAGCTCCTTGGCATTTGTTGATCC 1720972 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 1719918 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 1719977 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 1719978 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 1720037 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| |||||||| | ||| ||||| || || || ||||| Sbjct 1720038 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 1720078 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| |||||| || | ||||| ||||| ||| ||||| || Sbjct 1720167 CTTTGGGGTTCCAGGCACACATGATGATCCGTCGATCTTCCGGGTTTTTCTTGATGGTGT 1720226 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCC 29973 | | | |||||||||||| || || || Sbjct 1720227 CAATGATGTTTTGCAGCTGGTCGACACC 1720254 >seq3124 Length=9938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| || |||| || || ||||| || ||||| || Sbjct 3783 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 3842 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| | |||||| |||| | | ||| Sbjct 3843 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406061069247952