Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq430 340 1e-88 seq28 168 5e-37 >seq430 Length=361291 Score = 340 bits (376), Expect = 1e-88 Identities = 301/376 (80%), Gaps = 0/376 (0%) Strand=Plus/Minus Query 68936 AGTTCCAGAGTATCTGGCATTAGTGCGACAGAAGATGTCTGAATATAGTCACAACAGCTT 68995 ||||||||||||||||||| | ||| | ||| |||||||| |||| ||| | Sbjct 37130 AGTTCCAGAGTATCTGGCAGTGGTGTCAAAGATTGTGTCTGAAAATAGAGGCAAAGAAAT 37071 Query 68996 CCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTA 69055 | || | |||||| ||| ||||||||||| | ||||| || |||||||||||||| Sbjct 37070 GCCTCTGCCTTATCCAGATGGGCCCAAACTGACCGTTGGACCAGTGGAGGACACAGAGTA 37011 Query 69056 TAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGAC 69115 | ||||||||||||||||| |||| |||||||||||||||| | |||| | | Sbjct 37010 CCATGACAGGCCTGCAGTGGTCAACGCATGGGGAAAGTTTTATCTTCCCAAAACAACAAA 36951 Query 69116 GATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGAT 69175 |||| |||| ||||| |||||| ||||||| | |||| ||||||||||||||||||||| Sbjct 36950 GATGGAGGTTATCGGCTATGTGGAGGGAACTTCGTACCCATGTGACCAGCTTGTCCTGAT 36891 Query 69176 GACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAA 69235 |||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||||| Sbjct 36890 GACCTGTGAGGACCAGAAGGTGTACGGCTTTGATGGAGACGAGCTGCATCTGGTGGCTTC 36831 Query 69236 CTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCA 69295 ||| ||| |||| ||| ||| ||||||||| |||||||||| ||||| ||||| || Sbjct 36830 CTGCCTGAATCACATGTTTACAGAGGGAATAGCCGATCCTGCATTACAGAGTTATTACCA 36771 Query 69296 TGGGGAGGCCTTCAAA 69311 ||||||| | |||||| Sbjct 36770 TGGGGAGCCTTTCAAA 36755 Score = 113 bits (124), Expect = 3e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| |||||||||| |||||||| ||| |||| | ||| || |||||||| ||||| Sbjct 36670 GACCAAAGAGGACTGGGCGAAGGTGAAACAGGGCCCAGTGGGGAAGAGGTTGGAAGAGGA 36611 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 || || ||||||||||| |||| ||||| | | || |||||||| ||||| ||| Sbjct 36610 GCGTCGTAAACTGGTGGCTTCTCGCAAATCCGATTTCATGCAGAATCTCAAAATCATCAG 36551 Query 69437 ACAAA-ATAGAGGT 69449 ||||| | |||||| Sbjct 36550 ACAAAGACAGAGGT 36537 >seq28 Length=3093535 Score = 168 bits (186), Expect = 5e-37 Identities = 138/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||||||||| ||||| |||||||||||||| || ||||| ||||||||||| Sbjct 1720805 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 1720864 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| Sbjct 1720865 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 1720924 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 1720925 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 1720972 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 1719918 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 1719977 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| | || | |||||| |||||||| || ||||| || |||| Sbjct 1719978 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 1720037 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| |||||||| | ||||||||| || || || ||||| Sbjct 1720038 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 1720078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369414286490792