Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq110 410 2e-109 seq784 114 2e-20 >seq110 Length=1641499 Score = 410 bits (454), Expect = 2e-109 Identities = 1268/1949 (65%), Gaps = 17/1949 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || ||||||| | ||| || | | | | ||||| ||||| || Sbjct 1622946 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 1622887 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 1622886 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 1622827 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 1622826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 1622767 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || ||| | ||||| || || || || ||||| |||||||| Sbjct 1622766 AGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 1622707 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 1622706 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 1622647 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | | || || ||||| || ||||| | || || Sbjct 1622646 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 1622587 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | || || || ||||| |||| | || || || ||||| |||| || || || Sbjct 1622586 TGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGGG 1622527 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 | | | || || || || || || || ||||| || || || || || || || || Sbjct 1622526 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 1622467 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| |||||| | || ||||| |||| ||||| || || || || || || || ||| Sbjct 1622466 CGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 1622407 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| | || | ||| || ||| || || || || || | | ||| Sbjct 1622406 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCT 1622347 Query 76256 ATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || || || || || || || || || ||||| ||||| | | | Sbjct 1622346 GGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTG 1622287 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| || | | | ||||||||| || || || |||||||| || || || || | Sbjct 1622286 C--TGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 1622229 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| ||| || | |||||| || || | | || || || ||||| Sbjct 1622228 GCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGG 1622169 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATTATAGATTTG--TATC 76487 |||| || ||||| || | | ||||| | || || || | | || | || Sbjct 1622168 TCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCACCACCCTCTTCACTCTC 1622110 Query 76488 GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 |||| ||| |||||| || || | | || || || |||||||| || |||| Sbjct 1622109 CCTTCCTTCT--CATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 1622052 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCA 76607 ||||||||||| | ||||||||||| ||||| || | || || | |||| Sbjct 1622051 GCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCA 1621992 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTC 76667 | || || ||||| ||||| | || || || |||| || ||| | || || |||| Sbjct 1621991 TGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTC 1621932 Query 76668 CTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 76727 |||| ||||| || || || |||||||| | | || | |||||||| || ||||| | Sbjct 1621931 CTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACA 1621872 Query 76728 TCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTAT 76787 | || | | || |||| || || || ||||| || | || | || ||||| || | Sbjct 1621871 TGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGT 1621812 Query 76788 AAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTC 76847 ||||||||| ||| || | | ||||| || | || || || || | || || |||| Sbjct 1621811 AAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTC 1621752 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 | | || || || | | | ||| || || || || || || || || | Sbjct 1621751 CTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCG 1621692 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || | |||| ||||| |||||||| || || || || ||| ||||| || || | Sbjct 1621691 CGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 1621632 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || || |||| || | | || || || || || | || ||||| || || | Sbjct 1621631 AGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGG 1621572 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 ||||||| || || || || || ||||| || || | | || || || || | | Sbjct 1621571 TGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGT 1621512 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || || | || | ||| | ||| ||||| ||||| || | || || | Sbjct 1621511 GGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGA 1621452 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | |||| || ||| || |||| ||| || || || || ||||||| || || |||| Sbjct 1621451 TCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTC 1621392 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA-TGACA 77266 | |||||||| || || || || |||||| | || | || || || | | | Sbjct 1621391 TGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCT 1621332 Query 77267 GTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCT 77326 | | || || || ||||| | | || ||| || |||||| || | ||| Sbjct 1621331 G-CTTGGAGATCATGGGAGAGTGGCGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCC 1621273 Query 77327 TCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTA 77386 ||||| || ||||| || | || || || ||||| || || || || ||||| || || Sbjct 1621272 TCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTC 1621213 Query 77387 GCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCT 77446 || || || || || ||||| || |||| || || |||||| || || || |||||| Sbjct 1621212 GCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCT 1621153 Query 77447 AAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 77506 | || |||| || | || || || ||| | || | || || || || ||||||| Sbjct 1621152 AGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTG 1621093 Query 77507 ATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATACGAGA 77565 || | ||||| ||||| || | ||||| || || || || |||| || || || Sbjct 1621092 ATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGA 1621034 Query 77566 TGTGATTTTATCAAACATGACATTCTCCT 77594 |||||||||||||||||||| ||||| Sbjct 1621033 GGTGATTTTATCAAACATGACGCGCTCCT 1621005 >seq784 Length=80426 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || ||||||| |||||||| |||||||||||||| || || ||||| || ||| Sbjct 25647 GTGCCAGCGTTAAACAGGGTAGGAGAGGCATGAGTGAACCACTTCTCTGAAAGCAGGTTG 25706 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||| | |||| || || || | || |||||| || || || || | ||||| | Sbjct 25707 TATGTTTCAACAGCTGCCTCAATGTCTCCTTTATGAATCCCGACTGCCACTCTCATCAGC 25766 Query 77114 ATATGCTGAGGTC 77126 || ||||| |||| Sbjct 25767 ATGTGCTGGGGTC 25779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712750534218240