Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9982 138 3e-27 seq54 113 1e-19 seq176 105 2e-17 >seq9982 Length=962 Score = 138 bits (152), Expect = 3e-27 Identities = 168/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || |||||||| ||||| ||||||||||| |||| | || Sbjct 942 CCTGAGACGAAGGACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 883 Query 151943 TCTCCCATCTTCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || || ||| ||||| ||||| |||||||||||||| | | ||| Sbjct 882 GCGGCCATCTTCCAG-CTGCTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 824 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| |||||| |||| | | |||| || || || Sbjct 823 CCCTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCC 764 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||| ||||| || |||| |||||| || Sbjct 763 AGGGTGATGGTTTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 717 >seq54 Length=2421293 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || || ||||| ||||||||||| |||| | || Sbjct 1259671 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 1259612 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 1259611 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 1259552 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 || || || || ||||| ||||| |||| | | |||| || || || || Sbjct 1259551 CTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAG 1259492 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| ||||| || |||| ||||| Sbjct 1259491 GGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1259450 Score = 102 bits (112), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG- 151957 || ||||| || ||||| || ||||| ||||| |||| | || | |||||||| || Sbjct 1257646 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 1257587 Query 151958 -GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| || || | Sbjct 1257586 TGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 1257529 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || || |||| | | | || ||| || || || || || || |||| Sbjct 1257528 TCTTGGCCTTAACGTTCTCAATGGTATC---ACTGGGTTCCACCTCCAGGGTGATGGTTT 1257472 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| ||||| || ||||| |||| |||||| || Sbjct 1257471 TGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 1257438 >seq176 Length=1137095 Score = 105 bits (116), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||||||||| |||| | || Sbjct 797723 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 797664 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 797663 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 797604 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 797603 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 797547 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||| || |||||||| | |||||| || Sbjct 797546 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153515790356072