Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq105 178 2e-39 seq57 127 3e-24 seq29 100 4e-16 >seq105 Length=1692671 Score = 178 bits (196), Expect = 2e-39 Identities = 207/278 (74%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || ||||| ||| | | ||| | |||||||| | || || Sbjct 1168153 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 1168094 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 1168093 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 1168034 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 1168033 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 1167974 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | |||||||| ||||| | | ||| ||| ||||||||||| || |||||||| || Sbjct 1167973 GACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 1167914 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || ||| ||| || || || ||||||||||| Sbjct 1167913 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 1167876 Score = 132 bits (146), Expect = 7e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| |||||| || ||| |||||| ||| ||||| || Sbjct 1166554 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 1166495 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| ||| || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 1166494 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 1166435 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 1166434 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 1166394 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| ||||| ||||| ||||| ||||| || | | Sbjct 1165576 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 1165517 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| | |||||||||||| |||| | || ||||| ||||| | Sbjct 1165516 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 1165457 Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052 ||||| |||||||||| || ||||| Sbjct 1165456 GGAGGACTGTCAATCATATGGGATC 1165432 >seq57 Length=2403620 Score = 127 bits (140), Expect = 3e-24 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 |||| |||| |||| ||| |||||| || || | ||| | | |||| ||| Sbjct 1630455 ACGGGCACCACTTGGTGTTCAGACAGACCAGTTTCTTCAGAGTCGACGTTTTGATGATGT 1630396 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| ||| || || |||||||||||||||||||||||| | || ||| |||| | Sbjct 1630395 TGAAACCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGAT 1630336 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || | | |||||||| |||||||| || || |||| ||| | |||||||| ||||| | Sbjct 1630335 TCCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATA 1630276 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| |||||| || | || |||| || || |||| || | ||||| || || | || Sbjct 1630275 TGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCCAGGGCGTCAATGT 1630216 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 1630215 CGCCGTAGAG 1630206 Score = 125 bits (138), Expect = 1e-23 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||||||| |||| ||||||||||| || ||||||||| ||| |||||||| Sbjct 1623441 CCAATAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCG 1623382 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| || Sbjct 1623381 CCTTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 1623322 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCA-- 9412 || || || || || || || | || || ||||| || || ||| | |||| | Sbjct 1623321 AGGCCTGGGACGAGCCCGAACACTTCCTGTCCGACGGCGAGCCGCTGCTCAGCGGGGAAA 1623262 Query 9413 -CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 |||| ||| || | ||||| ||| |||| || ||| ||| || ||||| || Sbjct 1623261 CCTTC---AGGGTACACCATGTCCACTGGGACCTCAGACACCTTGGGAGGGTACATCTCC 1623205 Query 9472 CCGTCAATCATCTG 9485 || | |||| ||| Sbjct 1623204 CCATTGATCAGCTG 1623191 >seq29 Length=3056709 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| || || | || ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 1640067 CGAAGCCGACTTTGCCTCCGAATGTGCTGGGCTTCCAGTATCCTGGGGAACATATGGGGT 1640008 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| ||||||||||||||| || || || |||| || | ||||| || || || | Sbjct 1640007 TACCCAGGAGGCCTTTGAGGGAAAAGGGGGCACCCATTTCCACCATGCTTTCTCCAAATA 1639948 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | || || || | | | |||| || || |||| ||| | || | || |||| || Sbjct 1639947 TCGCCCCTGGTCGAGTCCTCTCCAGCAGTAACCCGGGGTAAAATTCAAGAGTGTCGATGT 1639888 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 1639887 CCCCGTAGAG 1639878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716691917473280