Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq176 158 3e-33 seq54 158 3e-33 >seq176 Length=1137095 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| ||||| || || || |||||||| ||||||| ||| || | Sbjct 797505 CAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGTG 797562 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||| |||||||| || ||||| ||||||| Sbjct 797563 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 797622 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || |||| || ||| Sbjct 797623 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 797682 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 797683 TCCAGAAGGAGTCCACCCTCCACCTGGT 797710 >seq54 Length=2421293 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||| |||||||| ||||||||| | ||| Sbjct 1259453 CAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGCGAC 1259512 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 1259513 ACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAG 1259572 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || |||| || ||| || Sbjct 1259573 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 1259632 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || || |||||| Sbjct 1259633 CAGAAAGAATCCACCCTCCACCTTGTT 1259659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203412996666608