Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9982 127 2e-24 seq176 123 2e-23 seq4001 93.3 4e-14 >seq9982 Length=962 Score = 127 bits (140), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTT-GCCGGCGAA 41730 || ||||| ||||| |||||||| |||||||| | || || |||||||| |||||| || Sbjct 911 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGCCGGCAAA 852 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| | ||| ||||| | ||| | || |||||| ||| |||||| ||| | Sbjct 851 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCTTGACATT 792 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||||| | |||||||||| || || |||||||| || || ||||| || Sbjct 791 CTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTGAC 732 Query 41851 GAAAATCTGCATGTT 41865 || ||||||||||| Sbjct 731 AAAGATCTGCATGTT 717 >seq176 Length=1137095 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 797719 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 797660 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | |||| || || Sbjct 797659 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 797600 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | | || || | ||||||||||| || Sbjct 797599 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 797541 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 797540 GATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq4001 Length=6841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| || || |||||||| |||||||| Sbjct 6672 AGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGG 6731 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 6732 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 6791 Query 41765 TTGTCCATGATTTT 41778 || ||| ||| || Sbjct 6792 TTATCCTGGATCTT 6805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462184771798400