Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq67 114 2e-20 seq3383 102 1e-16 seq425 100 3e-16 seq16 93.3 5e-14 >seq67 Length=2748889 Score = 114 bits (126), Expect = 2e-20 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 24234 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA 24293 |||||||| |||| | || ||||| || || || ||||| |||| | | || | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 24294 TAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 24350 || || | ||||| ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 24351 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 24405 |||| || || || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 24406 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 24465 |||| ||||||| ||| |||||||| |||| ||||||||| || || || |||||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 24466 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 | |||||||| | || || || | |||||||| Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTC 1060661 >seq3383 Length=54064 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 54086 ||| |||| |||||| ||||| || ||||| | || ||| || |||||||||| | | Sbjct 36176 CACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTT 36118 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||||||| || |||||||||||||| ||||| |||||| | | | ||| | ||||| | Sbjct 36117 GTTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAG 36058 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCC 54176 | |||||||| || | | ||||||||| Sbjct 36057 GCTCCAAGTAGATTGCAAATGCTCCAGGCC 36028 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| || || || |||||||| ||||| || ||||| || | || || | | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||||||||| |||| || || ||||| ||| | || || | || ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || || | || | ||||||||| |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||| ||||| ||||| || |||||||| ||||| || |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| || || || | ||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 54545 ATGTGCTGAGGTCTTTC 54561 |||||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 >seq425 Length=1236905 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 ||||||||||| |||||||| | || || || | |||| ||| Sbjct 158783 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 158827 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 ||||||||||| |||||||| | || || || | |||| ||| Sbjct 160569 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 160613 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || |||| ||| || || || ||||| || ||||| | || ||||| | Sbjct 157411 CCTCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCT 157470 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| |||||||||||||| || || ||||| || || || ||||| | Sbjct 157471 TCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATG 157530 Query 24277 CAA 24279 ||| Sbjct 157531 CAA 157533 >seq16 Length=4132212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||||| || || | || ||||| || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || | | ||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 24277 CAATAAGTCTTTCTCC 24292 | | | || |||||| Sbjct 2457960 CCACCACTCGTTCTCC 2457975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593534666754240