Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq293 87.8 2e-12 >seq13 Length=4293860 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || |||||||||||||| || | ||||| ||| || | Sbjct 4013873 CAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAA 4013932 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || | || || | |||||| || || || || || || |||||| || Sbjct 4013933 GCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAA 4013992 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | ||| | |||||| | ||| ||||| | || | ||||||| Sbjct 4013993 TTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGC 4014052 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||||||||||| |||||||| Sbjct 4014053 CAGTCAAGGTTTTTACAAATATCTGCAT 4014080 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| || || | || || ||||| || ||||||||||| || || || ||| Sbjct 4014324 CAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAGACAGGGTACGGCCATC 4014383 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| |||| || | ||||||||| ||||| || |||||||| || Sbjct 4014384 TTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGGATACCCTCCTTATC 4014443 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||||| | || | ||||| || ||| ||||| | || | || Sbjct 4014444 TTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAACCTCCAGAGTAATGGT 4014503 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || ||||| || ||||| Sbjct 4014504 CTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | || |||||||| ||||| |||||||| | || || ||| Sbjct 4014552 CAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGAAAGTGTACGGCCATC 4014611 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||||||||||| |||| | | |||||| || || || || || || ||||| Sbjct 4014612 TTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGGGATTCCTTCTTTGTC 4014671 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 | |||||| || || | ||| | |||||| | || | |||||||| | || | | Sbjct 4014672 TTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGT-TCGACCTCAAGAGTGATGG 4014730 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 | || || || || ||||| ||||| || ||||||| Sbjct 4014731 TCTTCCCAGTAAGTGTTTTCACAAATATTTGCATGG 4014766 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || || ||||| |||||||| || | ||||| ||| || Sbjct 4014100 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGGGTGCGACCATCTTCA 4014159 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || | || || | |||||| || || || || || || |||||| | Sbjct 4014160 AGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGA 4014219 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||||| | ||| ||||| | || | |||||| Sbjct 4014220 ATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTG 4014279 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||||||||| Sbjct 4014280 CCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| || ||||| ||||| || || || ||| || ||||||||||| Sbjct 4012972 GTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCCT 4013031 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | ||||| || || || || || || |||||| ||| || || Sbjct 4013032 GCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTC 4013091 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| || || | ||| | ||||| || |||| ||| Sbjct 4013092 ACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTT 4013151 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| || ||||| Sbjct 4013152 TTTACAAAGATTTGCAT 4013168 >seq293 Length=1515377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || |||||||| || | ||||| ||| || ||||| || || Sbjct 419897 GTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 419838 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || |||||||| || ||| || || ||| Sbjct 419837 GCAAAGATCAATCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGTATCTTACATTTC 419778 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | |||| || ||||| | ||| | || || || || ||||| Sbjct 419777 ACATTGTCAATAGTGTCAGATGCT-TCCACCTCCAGGGTAATGGTCTTTCCAGTTAGAGT 419719 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 ||| ||||| |||||||||||| Sbjct 419718 TTTCACAAAGATCTGCATGGCT 419697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433697223286096