Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq13 116 6e-21 >seq13 Length=4293860 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||||||| | || || || || || || || ||||| ||||| ||||| | Sbjct 4014536 TTCCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAG 4014595 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | || ||| || ||||||||||||||||| || ||||| ||||| || || | Sbjct 4014596 AAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTG 4014655 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 4014656 GGATTCCTTCTTTGTCTTG 4014674 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | | || | ||| || || |||||||| || |||||||||| Sbjct 4013624 TTCCACCCCTCAGACGAAGGACAAGATGCAAGGTGGATTCTTTCTGGATGTTATAATCTG 4013683 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||||| || ||||||||||||||||||||||| |||| Sbjct 4013684 ATAGGGTGCGACCATCTTCCAGCTGTTTCCCGGCAAAAATCAATCTTTGCTGATCTGGAG 4013743 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 4013744 GAATACCTTCTTTGTCTTG 4013762 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||||||||| || ||||||||||| | || | || ||| || | |||||||| Sbjct 4012971 AGTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCC 4013030 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||| ||||||||| || || ||||| |||||||| ||||| Sbjct 4013031 TGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTG 4013078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743292300712960