Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq293 96.9 3e-15 seq3383 87.8 2e-12 seq356 87.8 2e-12 >seq293 Length=1515377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || |||||| | || ||||| || Sbjct 420385 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 420444 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | |||||| || ||| | ||||| || || | || || ||||| Sbjct 420445 GACACTATTGAGAATGTCAAAGCAAAGA-TCCAAGACAAAGAGGGTATCCCACCAGACCA 420503 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || |||||||||||| ||||||| || | || || || Sbjct 420504 GCAGCGATTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAA 420563 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| || ||||| || || || | ||||| || |||| Sbjct 420564 CATCCAGAAAGAATCTACCCTTCACCTTGTGCTCCGTCTGAGAGGTGGTA 420613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || |||||| | || ||||| || Sbjct 420157 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 420216 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || |||||| || || | || || |||||| Sbjct 420217 GACACTATTGACAATGTGAAATGTAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAG 420276 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || ||||| ||| ||||||| || | || || ||| Sbjct 420277 CAGCGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 420336 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || |||||||| ||||| | ||||| || |||| Sbjct 420337 ATCCAGAAAGAATCCACCCTTCATCTTGTACTCCGTCTGAGAGGTGGTA 420385 >seq3383 Length=54064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || |||||||| ||||||| ||| | ||| ||| |||||| ||| | || || | | Sbjct 41275 ACCTGAAACTCCCCGGACAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATA 41216 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 ||||||||||| ||||| ||||| ||||| || || || |||||||| || | ||| Sbjct 41215 GATTCATTGTTCCCCAGGATCTGTGCGGTGGACGCAGTGGGCATCGGAGCGACCAG 41160 >seq356 Length=1361660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG----- 31244 |||||||| || |||||||| || || || || ||||| ||||| | || |||| Sbjct 965054 AACATGCAGATCTTCGTAAAAACCCTTACTGGGAAAACAATCACGCTAGAGGTTGTGTTG 965113 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| ||||| |||||| || || | | ||| ||||| |||||| | || | Sbjct 965114 AACCCAGCGACATGATCGAAAATGTTAAGGACAAAATCCAGGACAGGGAAGGTATTCCTC 965173 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | ||||||||| |||| || || ||||||||||| | ||||| Sbjct 965174 CTGACCAGCAGGGTCTGATCTTTGCTGGCAAACACCTTGAAGA 965216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445626050448960