Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq67 105 8e-18 seq3383 102 1e-16 seq425 91.5 2e-13 seq16 84.2 3e-11 >seq67 Length=2748889 Score = 105 bits (116), Expect = 8e-18 Identities = 188/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 33681 GCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 || ||||| | || | |||||||| || || |||||||| |||| | | ||| | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 33741 TAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33797 || || | ||||| ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 33798 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 33852 |||| ||||| || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912 | || || |||| ||| |||||||| |||| ||||||||| || || || || ||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 33913 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 | |||||||| | || || || | || ||||| Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTC 1060661 >seq3383 Length=54064 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTAT 63324 ||| |||| |||||| ||||| || ||||| | || ||| || |||||||| | | | Sbjct 36176 CACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTT 36118 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 ||||||| || |||||||||||||| ||||| |||||| | | | ||| | ||||| | Sbjct 36117 GTTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAG 36058 Query 63385 GTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | |||||||| || || | ||||||||| Sbjct 36057 GCTCCAAGTAGATTGCAAATGCTCCAGGCC 36028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| || || || || ||||| ||||| || | ||| || | ||| || | | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||||||||| |||| || || ||||| ||| | || || |||| ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || || || | || | |||||| || |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||| ||||| ||||| || |||||||| ||||| || |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| || || || | ||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 63783 ATGTGCTGAGGTCTTTC 63799 |||||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 >seq425 Length=1236905 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| || ||||| ||||| || |||||||| || ||||| | |||||| |||||| Sbjct 161643 ACCTCTTCTACAGTCCAGAATGAGGCTTCTGCCTTCTTGTACATCTGCCAGATATCATGA 161702 Query 34140 TATTGGATTGGGAAAATAACAAA 34162 || |||||||||||||| ||||| Sbjct 161703 TACTGGATTGGGAAAATGACAAA 161725 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||||||| || || || | ||| || ||||| |||||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 33902 CATCTGAAATCCGTAGAAACA 33922 || |||||||| |||||||| Sbjct 158783 AATTTGAAATCCATAGAAACA 158803 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||||||| || || || | ||| || ||||| |||||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 33902 CATCTGAAATCCGTAGAAACA 33922 || |||||||| |||||||| Sbjct 160569 AATTTGAAATCCATAGAAACA 160589 >seq16 Length=4132212 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | || || || || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || | | ||| || || || |||||||||||||||||||| || ||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 33724 C 33724 | Sbjct 2457960 C 2457960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629619301928640