Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq67 118 1e-21 seq3383 105 9e-18 seq425 100 4e-16 seq16 87.8 2e-12 seq1576 84.2 3e-11 >seq67 Length=2748889 Score = 118 bits (130), Expect = 1e-21 Identities = 191/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 36257 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316 |||||||| |||| | || ||||| || || || ||||| |||| | | ||| | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 36317 TAACCGGCACTGT---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 36373 || ||| ||| || ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 36374 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 36428 |||| || || || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 36429 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 36488 |||| ||||||| ||| |||||||| |||| ||||||||| || || || |||||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 36489 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 | |||||||| | || || || | |||||||| Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTC 1060661 >seq3383 Length=54064 Score = 105 bits (116), Expect = 9e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTAT 66117 ||| |||| |||||| ||||| || ||||| | || ||| || | |||||||| | | Sbjct 36176 CACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTT 36118 Query 66118 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 ||||||| || |||||||||||||| ||||| |||||| | | | ||| || ||||| | Sbjct 36117 GTTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAG 36058 Query 66178 GTTCCAAGTATATGGCCATAACTCCAGGCC 66207 | |||||||| || || | ||||||||| Sbjct 36057 GCTCCAAGTAGATTGCAAATGCTCCAGGCC 36028 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| || || || |||||||| ||||| || ||||| || | || || | | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||||||||| |||| || || ||||| ||| | || || |||| ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || || || | || | ||||||||| |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||| ||||| ||||| || |||||||| ||||| || |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| || || || | ||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 66576 ATGTGCTGAGGTCTTTC 66592 |||||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 >seq425 Length=1236905 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 ||||||||||| |||||||| | || || || | |||| ||| Sbjct 158783 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 158827 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 ||||||||||| |||||||| | || || || | |||| ||| Sbjct 160569 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 160613 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || |||| ||| || || || ||||| || ||||| | || ||||| | Sbjct 157411 CCTCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCT 157470 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| |||||||||||||| || || ||||| || || || ||||| | Sbjct 157471 TCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATG 157530 Query 36300 CAA 36302 ||| Sbjct 157531 CAA 157533 >seq16 Length=4132212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||| || || | || ||||| || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || | | ||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 36300 C 36300 | Sbjct 2457960 C 2457960 >seq1576 Length=363865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 9251 AAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAA 9310 |||| |||| || || | ||| |||||||||||||| | |||| ||||| || || | Sbjct 346481 AAGC-GTAAAAGGTGAAGGAAGAGATTGATGATATCAAGATAGAGGTTGATGGAAGCGAG 346423 Query 9311 CACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCC 9370 || || || || || || || || || || || | || || |||||||| |||||||| Sbjct 346422 AACGTACTCCTCTGGGGACAGTTTGTGCATCAGCAAATGAGTATCATAGATGATGAATCC 346363 Query 9371 GCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCA 9411 ||||||| | || ||| ||||| || || | ||||| Sbjct 346362 ACAGAATAGCAAAGCTCCACCAGCAGCCATCACTATCTCCA 346322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657965574293920