Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13 109 5e-19 >seq13 Length=4293860 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || | ||| | ||||| ||||| || ||||||||||| || || | Sbjct 4012951 AAGCGCAGGACAAGGTGCAGAGTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGG 4013010 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| || ||| ||||||| | |||||| || || || || |||||| Sbjct 4013011 CCATCTTCCAGCTGTTTTCCTGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCT 4013070 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | || | | ||| | ||||| | |||||||| || | ||| Sbjct 4013071 TTGTC-TTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGT 4013129 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || ||||| |||||||| || |||||||| Sbjct 4013130 GATTGTTTTTCCAGTCAAGGTTTTTACAAAGATTTGCAT 4013168 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| || || | |||| ||||| ||||||||||| Sbjct 4013884 GTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCG 4013943 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | ||||| | ||||| || || || || ||||||||||| ||| |||| | || Sbjct 4013944 GCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTC-TTGAATTTTGGCCTT 4014002 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||| | ||||||||||| | || | || ||||| ||||| || Sbjct 4014003 CACATTTTCAATGGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTCAAGGT 4014062 Query 139747 TTTTACGAATATTTGCAT 139764 |||||| ||||| ||||| Sbjct 4014063 TTTTACAAATATCTGCAT 4014080 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||||||||||||| | || |||||||| ||||| || ||||| Sbjct 4014538 CCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGAA 4014597 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | ||||| |||||| |||| | | ||||| || || || Sbjct 4014598 AGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGGG 4014657 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | ||| | ||||| | || || || Sbjct 4014658 ATTCCTTCTTTGTC-TTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTTCGAC 4014716 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| || || | ||||| || ||||||||||| Sbjct 4014717 CTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCAT 4014764 Score = 100 bits (110), Expect = 3e-16 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 || || ||||| || ||||||||||| | || | | ||| ||||| |||||||| | Sbjct 4013656 GTGGATTCTTTCTGGATGTTATAATC--TGATAGGGTGCGACCATCTTCCAGCTGTTTCC 4013713 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-T 139684 | ||| | |||| | ||||||||| ||||| || ||||||||||| ||| |||| | Sbjct 4013714 CGGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC-TTGAATTTTGGCC 4013772 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | || | |||||| | ||||||||||| | || | || ||||| || | Sbjct 4013773 TTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTGAGG 4013832 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || || ||||||||||| Sbjct 4013833 GTCTTCACAAATATTTGCAT 4013852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| || | ||| ||||| | || || || ||||| ||||| || || Sbjct 4014082 CCACCTCTTAAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAG 4014141 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||||||||| ||| | ||||| | ||||| || || || Sbjct 4014142 AGGGTGCGACCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4014201 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | || | |||||| | |||||||| Sbjct 4014202 ATACCTTCTTTGTC-TTGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCAC 4014260 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | || ||||| || | || || || || || |||||| Sbjct 4014261 CTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATA 4014309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495907814249600