Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq67 125 1e-23 seq16 105 1e-17 seq3383 96.9 5e-15 seq425 93.3 6e-14 >seq67 Length=2748889 Score = 125 bits (138), Expect = 1e-23 Identities = 207/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 50059 GCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA 50118 ||||||||| |||| | |||||||| || || || ||||| ||||| | | ||| | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 50119 TAACTGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 50175 || | || | ||||| ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 50176 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 50230 |||| ||||| || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 50231 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 50290 | || || |||| ||| |||||||| |||| ||||||||| || || || || ||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 50291 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATT 50348 | |||||||| | || || || | || ||||| || || |||||| | || || Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTCCTGACTGAAACGTTCAACCAAGTT 1060685 >seq16 Length=4132212 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| || || || || ||||| || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || | | ||||| || ||||||||||||||||||||||| |||||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || ||||| Sbjct 2457960 CCACCACTCGTTCTCC 2457975 >seq3383 Length=54064 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| || || || || ||||| ||||| || ||||| || | ||| || || | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||||| || |||| || || ||||| ||| | || || |||| ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || || || | || | ||||||||| |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||| ||||| ||||| || |||||||| |||||||| |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| || || || | |||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 80455 ATGTGCTGAGGTCTTTC 80471 |||||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 79997 || |||| |||||| ||||| || ||||| | || ||| || |||||||||| | || Sbjct 36175 ACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTTG 36117 Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 ||||| || |||||||||||||| ||||| |||||| | | | ||| | ||||| || Sbjct 36116 TTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAGG 36057 Query 80058 TTCCAAGTATATGGC 80072 |||||||| || || Sbjct 36056 CTCCAAGTAGATTGC 36042 >seq425 Length=1236905 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| || ||||| ||||| || |||||||| || ||||| | |||||| ||||| Sbjct 161642 TACCTCTTCTACAGTCCAGAATGAGGCTTCTGCCTTCTTGTACATCTGCCAGATATCATG 161701 Query 50517 ATATTGGATTGGGAAAATAACAAA 50540 ||| |||||||||||||| ||||| Sbjct 161702 ATACTGGATTGGGAAAATGACAAA 161725 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||||||| || || || | ||| || ||||| |||||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 50280 CATCTGAAATCCGTAGAAACA 50300 || |||||||| |||||||| Sbjct 158783 AATTTGAAATCCATAGAAACA 158803 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||||||| || || || | ||| || ||||| |||||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 50280 CATCTGAAATCCGTAGAAACA 50300 || |||||||| |||||||| Sbjct 160569 AATTTGAAATCCATAGAAACA 160589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718042653068320