Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq67 125 1e-23 seq425 102 1e-16 seq3383 96.9 5e-15 seq16 93.3 6e-14 >seq67 Length=2748889 Score = 125 bits (138), Expect = 1e-23 Identities = 216/312 (69%), Gaps = 9/312 (3%) Strand=Plus/Plus Query 42164 GCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 42223 |||||||| |||| | |||||||| || || || ||||| |||| | | ||| | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 42224 TAACCGGCACTGT---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 42280 || ||| ||| || ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 42281 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 42335 |||| ||||| || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 42336 ATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATC 42395 |||| || |||| ||| |||||||| || | ||||||||| || || || || ||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 42396 CGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTT 42455 | |||||||| | || || || || |||||||| || || |||||| | || || | Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTCCTGACTGAAACGTTCAACCAAGTTCT 1060687 Query 42456 CGTTCACTATTC 42467 ||| || |||| Sbjct 1060688 TGTTTAC-ATTC 1060698 >seq425 Length=1236905 Score = 102 bits (112), Expect = 1e-16 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| |||||||| ||||| ||||| ||||||||||| || ||||| | |||||||||||| Sbjct 161642 TACCTCTTCTACAGTCCAGAATGAGGCTTCTGCCTTCTTGTACATCTGCCAGATATCATG 161701 Query 42622 ATATTGAATTGGGAAAATAACAAA 42645 ||| || ||||||||||| ||||| Sbjct 161702 ATACTGGATTGGGAAAATGACAAA 161725 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || |||| ||| || || || ||||| || ||||| | || ||||| | Sbjct 157411 CCTCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCT 157470 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | |||||||||||||| || |||||||| || || || ||||| | Sbjct 157471 TCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATG 157530 Query 42207 CAA 42209 ||| Sbjct 157531 CAA 157533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||||||||||||||| || || | ||| || ||||| || ||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || |||||||| |||||||| | || || || || |||| ||| Sbjct 158783 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 158827 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||||||||||||||| || || | ||| || ||||| || ||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || |||||||| |||||||| | || || || || |||| ||| Sbjct 160569 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 160613 >seq3383 Length=54064 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| || || || || ||||| ||||| || ||||| || | ||| || | | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| || |||| || || ||||| ||| | ||||| |||| ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || || | || | ||||||||| |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 || |||| |||||| ||||| || ||||| | || ||| || |||||||||| | || Sbjct 36175 ACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTTG 36117 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || |||||||||||||| ||||| |||||| | | | ||| | ||||| || Sbjct 36116 TTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAGG 36057 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCC 72169 |||||||| || || | |||| |||| Sbjct 36056 CTCCAAGTAGATTGCAAATGCTCCAGGCC 36028 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||||||||| || || ||| | || ||||| | ||| || | Sbjct 43349 TCCACCCATAGAAGTGCATACTCGTCAGCTTCCCGTAGTTTGGTTCGGCAACGTGGATGT 43290 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | |||||| || || || ||||||||||| ||||| || ||||| || ||||| || | Sbjct 43289 TGAGCGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCAGCGGCCATCTTGATGATGGTTT 43230 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || | || ||||| | || ||||| Sbjct 43229 TCTGAGAGATCTCCCACACGGTCTTATA 43202 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||| ||||| ||||| || |||||||| |||||||| |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 ||||| || || || | |||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 72538 ATATGCTGAGGTCTTTC 72554 || ||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 >seq16 Length=4132212 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | || ||||| || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || | || ||||| || ||||||||||||||||||||||| || ||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 42207 C 42207 | Sbjct 2457960 C 2457960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670927891822880