Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq13 82.4 6e-11 >seq13 Length=4293860 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||| || || || || || ||||| | || || | | || |||||||| Sbjct 4012965 GTGCAGAGTAGATTCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTG 4013024 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| | || ||||| ||||| || ||| | || |||||||| ||| || Sbjct 4013025 TTTTCCTGCAAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTT 4013084 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | || || | |||||| ||| | ||| || ||||| || || Sbjct 4013085 GGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGT 4013144 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || ||||| ||||| ||||||||| Sbjct 4013145 CAAGGTTTTTACAAAGATTTGCATT 4013169 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || ||| | || | || | || || ||||||||||| ||||| || | Sbjct 4013854 CCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 4013913 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || ||||||||||| ||| | || || |||||||| || ||| Sbjct 4013914 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4013973 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| || || | | | || || | |||||| Sbjct 4013974 ATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACC 4014033 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 4014034 TCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCATT 4014081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414445534960072