Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13 116 2e-21 seq356 82.4 5e-11 >seq13 Length=4293860 Score = 116 bits (128), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||||| || || ||||| || |||||||| || |||||||||||||| Sbjct 4014538 CCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAATCAGAA 4014597 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || |||||||| |||||| ||| ||||| | |||||||| | || Sbjct 4014598 AGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAGGTGGG 4014657 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || |||||||| || || | ||| || || ||| ||| ||||| | |||| Sbjct 4014658 ATTCCTTCTTTGTCTTGAATTTTAGCC---TTGACATTTTCAATGGTGTCACTTGGTTCG 4014714 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || || || || ||||| ||||| || || ||||||||| Sbjct 4014715 ACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCATG 4014765 >seq356 Length=1361660 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 |||||||||||||| || ||||| || || |||||||| || |||| | | || Sbjct 965273 AACACCAAATGCAAGGTTGACTCCTTCTGGATATTGTAGTCTGACAGCGTACATCCATCT 965214 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || | || || ||| ||| || | || |||||||| | || || ||||| | || Sbjct 965213 TCAAGGTGTTTGCCAGCAAAGATCAGACCCTGCTGGTCAGGAGGAATACCTTCCCTGTCC 965154 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG-----TCCAGAGTTA 33332 || | || || ||| ||| ||||| |||||| ||| || || || | Sbjct 965153 TGGATTTTGTCCTTAACATTTTCGATCATGTCGCTGGGTTCAACACAACCTCTAGCGTGA 965094 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | ||||| || ||||| ||||||||||| || |||||||| Sbjct 965093 TTGTTTTCCCAGTAAGGGTTTTTACGAAGATCTGCATGTT 965054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318679742050824