Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13 102 6e-17 >seq13 Length=4293860 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| || || |||||||| || || |||| |||| ||||| || ||||| Sbjct 4013662 TCTTTCTGGATGTTATAATCTGATAGGGTGCGACCATCTTCCAGCTGTTTCCCGGCAAAA 4013721 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | |||||| || |||| | ||||||||| ||| |||||| || || | Sbjct 4013722 ATCAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTC 4013781 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || |||||||| || | ||||||||||| || || | ||||||||| Sbjct 4013782 TCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACA 4013841 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 4013842 AATATTTGCAT 4013852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| || || |||||||| || ||| |||| |||| |||||||||||||| Sbjct 4012978 TCTTTCTGGATGTTATAATCTGACAAGGTACGGCCATCTTCCAGCTGTTTTCCTGCAAAG 4013037 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| | ||||||||| | || | ||||||||| ||| ||| || || || | Sbjct 4013038 ATCAGTCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTCACATTT 4013097 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || |||||||| || | || |||||||| || || || || || ||| Sbjct 4013098 TCAATGGTGTCACTTGGCTCCACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTTTTTACA 4013157 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 4013158 AAGATTTGCAT 4013168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| |||||||| ||||| | | ||| |||| |||||||||||||| ||||| Sbjct 4014573 CTCTTTCTGAATATTGTAATCAGAAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAA 4014632 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || || | |||||||| | || | |||||||| ||| |||||| ||||| | Sbjct 4014633 GATTAATCTCTGCTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATT 4014692 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || || || || || | || || || || || || | || ||||| Sbjct 4014693 TTCAATGGTGTCACTTGGTTCGACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCAC 4014752 Query 44110 AAATATTTGCATG 44122 ||||||||||||| Sbjct 4014753 AAATATTTGCATG 4014765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| || | || | ||| || ||| || |||||||| || || || Sbjct 4013854 CCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 4013913 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| || | ||||| || |||||||||| || |||||||| | || Sbjct 4013914 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4013973 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| |||||| || || | ||| || || |||||||| Sbjct 4013974 ATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACC 4014033 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || || || || |||||||| ||||| Sbjct 4014034 TCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 4014080 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| | ||||| ||||| |||||| ||||| || || || ||||| Sbjct 4014309 ACCACCCCTCAGACGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAGA 4014368 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||||| || ||||| |||| || ||||| || |||| Sbjct 4014369 CAGGGTACGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 4014428 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || |||||| ||||| || || | ||| || || ||||| || Sbjct 4014429 GATACCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAAC 4014488 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || ||||| ||||||||||| |||||||| Sbjct 4014489 CTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||| || |||||||||| || |||||||| | || | |||||||| Sbjct 4014152 CATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTT 4014211 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| || || | ||| || || |||||||| || | |||| Sbjct 4014212 TGTCTTGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAA 4014271 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || || | ||||||||||| || ||||| Sbjct 4014272 TTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354668690815824