Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq784 93.3 2e-14 seq220 86.0 3e-12 seq3012 84.2 1e-11 seq99 84.2 1e-11 seq554 82.4 4e-11 seq499 82.4 4e-11 >seq784 Length=816817 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| || || |||||| | |||||||||| ||||||| |||||||||||| Sbjct 269276 AATAAAAAAACACAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 269335 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 269336 CCACGCTCTAACCAACTGAGCTAACCGGCC 269365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 328994 AAAAAATAAAAGAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 329053 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTT 11548 ||||||| |||||||||||||| |||| || | | ||||| |||| Sbjct 329054 ACGCTCTAACCAACTGAGCTAACCGGCCATCTTCTA-TGTGACTTTT 329099 >seq220 Length=1752036 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 969404 AAAAAAACAC-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 969462 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 969463 GCTCTAACCAACTGAGCTAACCGGCC 969488 >seq3012 Length=81564 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 46434 AAAAAAAAAATTATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 46493 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 46494 CGCTCTAACCAACTGAGCTAACCGGCC 46520 >seq99 Length=2470598 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1800331 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1800390 Query 11528 CCG 11530 ||| Sbjct 1800391 CCG 1800393 >seq554 Length=1052405 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 885730 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 885789 Query 11528 CC 11529 || Sbjct 885790 CC 885791 >seq499 Length=1121601 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 736407 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 736466 Query 11528 CC 11529 || Sbjct 736467 CC 736468 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261410927758288