Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq126 271 5e-68 >seq126 Length=2244275 Score = 271 bits (300), Expect = 5e-68 Identities = 286/373 (77%), Gaps = 5/373 (1%) Strand=Plus/Minus Query 105455 TAGCTGACTTTGTGAAGAAAAACCGAGATGCTAAATTACATCCACCAGCTAGTGAAGCCG 105514 || |||| ||||| | ||| || || || | | | | || | |||| | |||| | Sbjct 508375 TATCTGAACTTGTGGAAAAATACAGAAATACCATAATTCAACTACCAAAGAACGAAGTCA 508316 Query 105515 CAAAGGATATGTACATTCGCATCTGTGGCCTGGACGGCACAATGTACTCGGGTGAGCAGT 105574 | | ||| | ||||| || ||||||| ||||| ||||||||||||||||| ||| || Sbjct 508315 CTGATGATTTATACATGCGAGTCTGTGGACTGGATGGCACAATGTACTCGGGGGAGAGGT 508256 Query 105575 ATACACTGGAGAGCTGGGAAGAGCTTTACCTTCCAGAACCAACCAAAATGGAAGTCTTTG 105634 || || |||||||||||||| ||||||||||| ||||||||||||||||||| ||| Sbjct 508255 TTATGCTTGAGAGCTGGGAAGAACTTTACCTTCCTAAACCAACCAAAATGGAAGTTATTG 508196 Query 105635 GCGTTCTGGAGAGCTCAAAAGGCATGGCTCCA-TTCCCACAATGGATAGTTCTCGTGGGA 105693 || | || ||| |||||||||| |||| |||| || ||||||||||| ||||| |||||| Sbjct 508195 GCATACTAGAGCGCTCAAAAGGTATGG-TCCACTTTCCACAATGGATCGTTCTTGTGGGA 508137 Query 105694 GAAGATGGACATGTATATGGCTATGAAGATGAAAGGCTTTATCTTTTTGCCGACAGTCTA 105753 |||||| || ||| |||||||||||||||||| || || | ||||| ||||| || Sbjct 508136 GAAGATAAACGTGTGTATGGCTATGAAGATGAAGTACTCCATGTACTTGCCAACAGTATA 508077 Query 105754 CAAAAGCTTGTAAAGGATGGCATAA---AAACTGACGTACACTATGACTACCCAGATGAC 105810 ||| |||| ||| ||||| || | | | || || | |||| |||||||||| || Sbjct 508076 CAAGAGCTGCGAAATGATGGTATTAAGGATATTGGCGAATCCTATTCCTACCCAGATCAC 508017 Query 105811 ATCAGTGATGAGG 105823 ||||||||||||| Sbjct 508016 ATCAGTGATGAGG 508004 Score = 141 bits (156), Expect = 6e-29 Identities = 210/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 5580 TGCGTATCTGTGATCTGAGCGGCACTATATACATGGGAGAGACCTTCATTCTTGAGAGCT 5639 |||| |||||| ||| ||||| || ||| ||| |||| || || |||||||||| Sbjct 508300 TGCGAGTCTGTGGACTGGATGGCACAATGTACTCGGGGGAGAGGTTTATGCTTGAGAGCT 508241 Query 5640 GGGAAGAGCTTTACCTTCCCGAACCAACCAAAATGGAGGTTCTGGGGACTCTGGAGAGCT 5699 ||||||| ||||||||||| |||||||||||||||| ||| | || | || ||| ||| Sbjct 508240 GGGAAGAACTTTACCTTCCTAAACCAACCAAAATGGAAGTTATTGGCATACTAGAGCGCT 508181 Query 5700 GTTGTGGCATACCCCCCTTCCCAGAGTGGATCGTTATGGTGGGGGAAGACCAATGTGTGT 5759 || || || ||| ||| | ||||||||| | ||||| ||||| || |||||| Sbjct 508180 CAAAAGGTATGGTCCACTTTCCACAATGGATCGTTCTTGTGGGAGAAGATAAACGTGTGT 508121 Query 5760 ACGCCTATGGGGATGAGGAGATCCTCC-TGT--TTGCCTACAGTGTAAAGCAGCTGGTGG 5816 | | ||||| ||||| | | |||| ||| ||||| ||||| || | ||||| Sbjct 508120 ATGGCTATGAAGATGAAG---TACTCCATGTACTTGCCAACAGTATACAAGAGCTGCGAA 508064 Query 5817 AGGAAGGCATACAGGAAACCGGCATAAGCTACAAGTACCCAGACGACATCAGTGA 5871 | || || || |||| | ||| | ||| |||||||| |||||||||| Sbjct 508063 ATGATGGTATTAAGGATATTGGCGAATCCTATTCCTACCCAGATCACATCAGTGA 508009 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 105821 AGGAAGAGGAAGTCCTTCAGAACGATGAAGAGATTCAGAAACTAAGACAGAAGACCGATG 105880 |||||||||||||||||||||| |||||||||||||||| | |||| || ||||| Sbjct 449332 AGGAAGAGGAAGTCCTTCAGAAAGATGAAGAGATTCAGACATTAAGGCACCAGACCAGGA 449273 Query 105881 AATTCATTGA 105890 |||||||||| Sbjct 449272 AATTCATTGA 449263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 105821 AGGAAGAGGAAGTCCTTCAGAACGATGAAGAGATTCAGAAACTAAGACAGAAGACCGATG 105880 |||||||||||||||||||||| |||||||||||||||| | |||| || ||||| Sbjct 506355 AGGAAGAGGAAGTCCTTCAGAAAGATGAAGAGATTCAGACATTAAGGCACCAGACCAGGA 506296 Query 105881 AATTCATTGA 105890 |||||||||| Sbjct 506295 AATTCATTGA 506286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338660806405152