Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq81 167 3e-36 seq1540 141 1e-28 >seq81 Length=2592809 Score = 167 bits (184), Expect = 3e-36 Identities = 194/262 (74%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| ||| || ||| |||| |||||||| | || || || || || | || Sbjct 1420582 GGAAGGCGACCTCCGGGCACCTCTTGACGTTCCGGCACACCAGCTTCTCTATGGAGGCGG 1420523 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || || || ||| || || ||||||||||| || |||||||| |||||| Sbjct 1420522 TCTTTACCATGTTGAAGCCCGTCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCCGGGG 1420463 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| ||||||| ||||||||||| || || || |||| ||||| |||| Sbjct 1420462 AGCAGATGGGGTTCCCCATGAGTCCTTTGAGGGAGAAGGGGGCTCCCATCTCGATCATGC 1420403 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| |||||||||| |||||| ||| || |||| || || || | ||| ||||||| Sbjct 1420402 TCTCCCCGAAGATGGAGTTGGGGTGGGTTTTCTCCAGCAGGAGGCCCGGGTAGAACTCCA 1420343 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || |||||||| ||||| || Sbjct 1420342 GGGCGTCGATGTCGCCGTACAG 1420321 >seq1540 Length=380051 Score = 141 bits (156), Expect = 1e-28 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| |||| || ||| | |||| || || | || ||||| || || || || Sbjct 251656 GGACAGTCTTTAACATTGTTGCAGATAAGTTTTTGTAAAGAGGCACTGTTTACAATATCA 251597 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| |||||| || ||||| ||||||||||| | || ||||| || ||| Sbjct 251596 AAGCCCACCCTTCCGCCAAATGTGCTAGGTTTCCAGTATTCAGGAGAGCAAATTGGGTTT 251537 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| | ||||||||||| || | || | ||| |||| || || ||| Sbjct 251536 CCCATAAGGCCTTTCAATGAAAACGGAGCACCAATTTCAACCATGGTCTCTCCAAATATG 251477 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || |||||||| ||||||||| | || | ||| || || ||||| || |||||| Sbjct 251476 GCCCCAGGACGGGGTCGTTCCACCAAAAGACCTGGGTAGAATTCTACAGCATCAATGTCT 251417 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTATTAATaaaaata 8992 || || || | ||||| |||| | ||||||||||||| | | || ||||| | Sbjct 251416 CCATATAGTTCTTCAAGTTCTGCAGATAATTCCTTTTCTCCTATAAAACAAAGAAAAAAA 251357 Query 8993 aaa 8995 ||| Sbjct 251356 AAA 251354 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10024 TTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCC 10083 |||||||||||||||| || ||| ||||||||||||| | |||| |||||| Sbjct 247345 TTGTTCTTACCCCATGCCCAAGTGCTTTAGTGAAGGCAGCTCCTCTTTTGGTGTCAGTCT 247286 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 |||| || ||||| || || |||||| |||| || |||||||| | ||||| ||||| | Sbjct 247285 TAAAGAATTGGTGTGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTGGTTCCCTGTG 247226 Query 10144 GATCGGGAGTGAA 10156 | || || |||| Sbjct 247225 GGTCAGGGATGAA 247213 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 9647 GTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCC 9706 |||| ||| ||| || || || || | |||| | ||| || || | ||||||||||| Sbjct 247858 GTTCATCATCCCACTCAGGGTGCTCCTGCATCAGTATATCACAGACGCGGTTGTGTTCCC 247799 Query 9707 TGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGA 9766 | ||||| || ||| |||||||| | || || || ||||||||| |||| || || | Sbjct 247798 TCAGCCATATGATAGAATACATCATCAACCCTGGTACAAGGCCAAAAACCTCCTGTCCAA 247739 Query 9767 CAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTT 9826 | || | || | || ||| |||| | || || || | ||| | ||| || | Sbjct 247738 CTGCAAATCGAAGATGTTCTGGCATATGTGGTGGGTAAAGCATTTCAACCCCTGTGTCAT 247679 Query 9827 TGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 | || | || || ||||| ||||| |||||||||| Sbjct 247678 TCACTGTTGGAGGGTACATCTCACCATCAATAATCT 247643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708301720966720