Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq425 104 2e-17 >seq425 Length=1236905 Score = 104 bits (114), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 |||| |||| |||| || || |||| ||||||||| ||||| | ||| ||||| || || Sbjct 157404 ATGCTTACCT-CATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCC 157462 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 || ||| || | ||| || || | ||||||| ||| || || || || ||||| || || Sbjct 157463 TCGCTTCTTCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGC 157522 Query 21610 AGCAAATGCAACTAATCGTTCACC 21633 |||||||||||| | || ||||| Sbjct 157523 AGCAAATGCAACCACACGCTCACC 157546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 21117 AAATATTT-ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATA 21175 ||||| || ||||| || || ||||||| | ||| || || | | || ||||| Sbjct 155296 AAATAGTTCATTTAGAAGTCCGCATCTAGAGTGAATTTATGGTCCGATGTCTTGGACATG 155355 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | ||||| || ||||| |||| |||| | || || || ||||| ||||| ||||||| | Sbjct 155356 ACCCCCATCTTCTGATATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTCCCTTCCAGT 155415 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTC 21267 || || ||||| || |||||||||||||| Sbjct 155416 GAAATGTTCTCCATGAAGTCAAATGGATTTTC 155447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531733331033120