Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 seq293 86.0 5e-12 >seq13 Length=4293860 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| ||||| || || | ||| || ||||| |||||||| ||||||||||| | Sbjct 4013853 CCCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGA 4013912 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | || || | ||||| || ||| | || |||| ||| ||||| || Sbjct 4013913 GAGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGG 4013972 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || |||||||| ||||| |||||| | | | ||||| | |||||| Sbjct 4013973 AATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 4014032 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 4014033 CTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCATT 4014081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| |||||||| ||||||||||| | | ||| | || Sbjct 4014097 AGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGGGTGCGACCATCT 4014156 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || |||| ||| ||||| || | || |||||||| Sbjct 4014157 TCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGAATACCTTCTTTGTCT 4014216 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | | ||||| | |||||| |||| || || ||| Sbjct 4014217 TGAATTTTGGCCTTCACATTCTCAATTGTGTCACTTGGCTCCACCTCCAGAGTAATTGTT 4014276 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || |||||||||||||| Sbjct 4014277 TTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 >seq293 Length=1515377 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||| || ||||| || || || ||||||||||| | | ||| | | || Sbjct 420368 AGTACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 420309 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || | ||||| ||||| || | ||||||||||| Sbjct 420308 TCCAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCC 420249 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||| | | | | |||||| | |||||| || | ||||||||| Sbjct 420248 TGGATCTTACATTTCACATTGTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 420189 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || ||||| |||||||| Sbjct 420188 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 420157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | || || ||||| || || || ||||||||||| | | ||| | |||| Sbjct 92872 AGTACAAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCT 92813 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || | | ||| ||||| || | ||||||||||| Sbjct 92812 TCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCT 92753 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | |||||| | |||||| || | |||||||| Sbjct 92752 TGGATCTTTGCT--TTGACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGG 92695 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| || || |||||||| Sbjct 92694 TCTTGCCTGTGAGGGTTTTCACGAAGATCTGCAT 92661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404963646592120