Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2295 122 6e-23 seq1492 107 1e-18 seq13 102 5e-17 seq19356 98.7 7e-16 seq1856 93.3 3e-14 seq251 89.7 3e-13 >seq2295 Length=178014 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||| ||||| || |||||| | Sbjct 155424 AAGCCCGTTCCCTTGGCTGTCGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 155365 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 155364 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 155330 >seq1492 Length=400294 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 94695 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCCGCTATCGGTCTCGC 94636 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||| Sbjct 94635 GCCGGTGTTTAGCCTTA 94619 >seq13 Length=4293860 Score = 102 bits (112), Expect = 5e-17 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| || || | ||||| || |||||| |||||||| || ||||| | Sbjct 4014078 CATT-CCACCTCTTAAGCGAAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGT 4014136 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || | || || | ||||| ||||||||||| || | || || || | Sbjct 4014137 CTGAGAGGGTGCGACCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTG 4014196 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT- 38264 ||| | ||||||||||| |||||| ||||||||||| | || | ||||| Sbjct 4014197 GGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTCTCAATTGTGT---CACTTG 4014253 Query 38265 --TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | ||||| ||||| || || | ||| ||||| || |||||||| Sbjct 4014254 GCTCCACCTCCAGAGTAATTGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 4014308 Score = 102 bits (112), Expect = 5e-17 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | |||||| || || || | || ||| || ||||||||||||| Sbjct 4014534 CATT-CCACCTCTAAGACGCAAAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAAT 4014592 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || ||||||||||| ||||| |||| | || || || | Sbjct 4014593 CAGAAAGTGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTCTGCTGGTCAG 4014652 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| |||||| ||| ||||| | | || || | || Sbjct 4014653 GTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCACTTGGTT 4014712 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 | || || | || || || || || || | |||||||| ||||| |||||| | | || Sbjct 4014713 CGACCTCAAGAGTGATGGTCTTCCCAGTAAGTGTTTTCACAAATATTTGCATGGTCTGCA 4014772 Query 38326 A 38326 | Sbjct 4014773 A 4014773 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| ||||| |||| || | || ||||| || || || || || ||||| ||| Sbjct 4012942 CCACCCCTCAAGCGCAGGACAAGGTGCAGAGTAGATTCTTTCTGGATGTTATAATCTGAC 4013001 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || | |||||||| ||||| || || | ||| || || | ||| Sbjct 4013002 AAGGTACGGCCATCTTCCAGCTGTTTTCCTGCAAAGATCAGTCTTTGCTGGTCTGGGGGA 4013061 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267 | ||||||||||| ||| || ||||||||| | | || | ||||| || Sbjct 4013062 ATACCTTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTGT---CACTTGGCTCC 4013118 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || ||||| || ||||||||||| || || || ||||| Sbjct 4013119 ACTTCTAGGGTGATTGTTTTTCCAGTCAAGGTTTTTACAAAGATTTGCAT 4013168 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| | | || | ||| || ||| ||||||||||| ||||| || || Sbjct 4013854 CCTCCTCTCAGCCTGAGGACAAGATGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 4013913 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| ||||||||||| || | || || || | ||| Sbjct 4013914 AGGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAATATCAGCCTCTGCTGGTCTGGGGGA 4013973 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267 | ||||||||||| |||||| ||||||||| | | || | ||||| || Sbjct 4013974 ATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATGGTGT---CACTTGGCTCC 4014030 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| || ||||||||||| || ||||||||||| Sbjct 4014031 ACCTCCAGAGTAATTGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 4014080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||||||||| ||||| || ||| || || || || |||||||||| Sbjct 4014308 TACCACCCCTCAGACGCAACACTAAATGCAGCGTGGATTCTTTCTGGATGTTGTAATCAG 4014367 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | ||||| || ||||| || || | || ||||| | | Sbjct 4014368 ACAGGGTACGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 4014427 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || ||||| ||| ||||||| | || || | |||| Sbjct 4014428 GGATACCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATTGTGTCACTGGGCTCAA 4014487 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || ||||| ||||| || || ||||| Sbjct 4014488 CCTCCAGAGTAATGGTCTTTCCTGTTAAGGTCTTCACAAAGATTTGCAT 4014536 >seq19356 Length=249 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| | Sbjct 190 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTCCGCTATCGGTCTCAC 131 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||| Sbjct 130 GCCGGTGTTTAGCCTTA 114 >seq1856 Length=280690 Score = 93.3 bits (102), Expect = 3e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||| Sbjct 107342 CTCTCTCTTCAAAGTTCTTTCCAACTTTCCCTTACGATACTTGTCCGCTATCGGTCTCGC 107283 Query 20007 G 20007 | Sbjct 107282 G 107282 >seq251 Length=1638683 Score = 89.7 bits (98), Expect = 3e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||| Sbjct 193050 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGATACTTGTTCGCTATCGTTCTCG 193108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334844378327228