Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq67 114 2e-20 seq3383 105 8e-18 seq425 96.9 4e-15 seq16 87.8 2e-12 >seq67 Length=2748889 Score = 114 bits (126), Expect = 2e-20 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 32760 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 32819 |||||||| |||| | || ||||| || || || ||||| |||| | | ||| | | Sbjct 1060388 GCAAATGACTCAGAGGAAAAGATTCCCTCCACAGCAGCAAATGCAACCACACACTCACTA 1060447 Query 32820 TAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 32876 || || | ||||| ||| | | | | ||| || ||||||||||| |||||| Sbjct 1060448 TAGGTTGCATTGTTGTCACTAATCTAGCTGAGTGTCCATTCAGCCTTCTTTTTCACACAA 1060507 Query 32877 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA-----T 32931 |||| || || || |||| || | | || | || || |||||||| | | Sbjct 1060508 GGCAGAGTTTCAATTACATTGAACAAGAACTTCCTCTCCTTGGGATCTTTAAAACCCAGT 1060567 Query 32932 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 32991 |||| ||||||| ||| |||||||| |||| ||||||||| || || || |||||||| | Sbjct 1060568 ATGTGTCAATCAGAAGGCTATACATCTCCGGATGAATGTTCTCTATTGCAATTTGAAAGC 1060627 Query 32992 CGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 | ||||| || | || || || | |||||||| Sbjct 1060628 CATAGAAACAGCACGCTTCTGTGACTTGTACTTC 1060661 >seq3383 Length=54064 Score = 105 bits (116), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63128 ||| |||| |||||| ||||| || ||||| | || ||| || |||||||||| | | Sbjct 36176 CACACGTTCCATAAACAGATCCGGGATCCACAAGGC-ATAGAAGAGATCTCTGGCCCGTT 36118 Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 ||||||| || |||||||||||||| ||||| |||||| | | | ||| | ||||| | Sbjct 36117 GTTCCTCCTTCCCTGTATTCTTTTTCAGATCCAGGAACTCAAACACATCGTAGTGCCAAG 36058 Query 63189 GTTCCAAGTATATGGCCATAACTCCAGGCC 63218 | |||||||| || || | ||||||||| Sbjct 36057 GCTCCAAGTAGATTGCAAATGCTCCAGGCC 36028 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| || || || |||||||| ||||| || ||||| || | || || | | Sbjct 27400 CACTGAATATCTTCTTGGTCTCTTTGTGCAGATTGGAGACGGCGATCCGGGCAGCCAAGA 27341 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||||||||| |||| || || ||||| ||| | || || |||| ||| |||| Sbjct 27340 TGGCATAATCCGGGTGTTTGGTGGTCAGGGTGGCCGCTGTCTCTGCCGCCAAAGTATCCA 27281 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || || | || | ||||||||| |||||||| Sbjct 27280 GCTCCACGGTGGTGACCCCGCTGTACAATCCTTGGATCACCTTCAT 27235 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||| ||||| ||||| || |||||||| ||||| || |||||| Sbjct 30701 GTGCCGGCATTGAACAGGGTGGGAGAGGCGTGTGTGAACCATTTCTCAGACAGCAGATTG 30642 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| || || || | ||||| || || || ||||| || | || | ||| | | Sbjct 30641 TACGTTTCTATGGCCGCTTCTATGTCGTTTTTGTGGATTCCGACAGACACCCTCATGAGC 30582 Query 63587 ATGTGCTGAGGTCTTTC 63603 |||||||| || | ||| Sbjct 30581 ATGTGCTGGGGACGTTC 30565 >seq425 Length=1236905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || |||| ||| || || || ||||| || ||||| | || ||||| | Sbjct 157411 CCTCATCTCTGCTGATTAGTTCATTAGAGAATGTGAGACCAGGCATCAACCCTCGCTTCT 157470 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| |||||||||||||| || || ||||| || || || ||||| | Sbjct 157471 TCAGCCAGAAGATGGCTGCAAATGATCCAGAGAAAAAGATTCCCTCCACAGCAGCAAATG 157530 Query 32803 CAA 32805 ||| Sbjct 157531 CAA 157533 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 158723 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 158782 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 ||||||||||| ||||| || | || || || | |||| ||| Sbjct 158783 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 158827 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||||||||||||||| ||||| | ||| || ||||| |||||||||||||| || || || Sbjct 160509 ATCTTTAACATATGTGTCAATGAGAAGGCTGTACATCTCCGAATGAATGTTCTCCATTGC 160568 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 ||||||||||| ||||| || | || || || | |||| ||| Sbjct 160569 AATTTGAAATCCATAGAAACAGCGCGCTTCTGTGACTTGTATTTC 160613 >seq16 Length=4132212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||||| || || | || ||||| || ||||| |||||||| || || | ||| | Sbjct 2457840 CCTCGTCTCGGCTGATGAGCTCATTGGAGAAGGTGAGACCGGGCATCAGACCTCTCTTCT 2457899 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || | | ||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 2457900 TCAACCAGAAAACAGCAGCAAAGGAGCCAGAAAAGAAGATTCCTTCTACCGCGGCAAACG 2457959 Query 32803 C 32803 | Sbjct 2457960 C 2457960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633432500964800