Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13 145 7e-30 seq293 104 2e-17 >seq13 Length=4293860 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||||||||| || ||||| || ||| | || || | || |||||| | Sbjct 4014081 AATGCAGATATTTGTAAAAACCTTGACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAG 4014022 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || ||||| | |||| ||| ||||||||||| ||||| || |||| Sbjct 4014021 TGACACCATTGAAAATGTGAAGGCCAAAATTCAA-GACAAAGAAGGTATTCCCCCAGACC 4013963 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| ||||| | ||||||| ||||| | || |||| Sbjct 4013962 AGCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGACTACA 4013903 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| |||||||| || ||| | || || ||||| |||||||| Sbjct 4013902 ACATTCAAAAGGAATCCACCCTCCATCTTGTCCTCAGGCTGAGAGGAGG 4013854 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| | || || | || |||||| | | Sbjct 4014308 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4014249 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | |||| ||| ||||||||||| ||||| || ||||| Sbjct 4014248 GACACAATTGAGAATGTGAAGGCCAAAATTCAA-GACAAAGAAGGTATTCCCCCAGACCA 4014190 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | ||||||| |||||| | || ||||| Sbjct 4014189 GCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGTCGCACCCTCTCAGACTACAA 4014130 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| |||||||| || || || || || | ||||||| |||| Sbjct 4014129 CATCCAAAAGGAATCCACTCTCCACTTGGTTCTTCGCTTAAGAGGTGGAA 4014080 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| | || || | || |||||| | | Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | |||| ||| ||||||||||| ||||| || || || Sbjct 4013792 GACACAATTGAGAATGTGAAGGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCAGATCA 4013734 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||||||||| ||||| | ||||||| |||||| | ||||| || Sbjct 4013733 GCAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTATCAGATTATAA 4013674 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| | ||| | || || | || || || |||| Sbjct 4013673 CATCCAGAAAGAATCCACCTTGCATCTTGTCCTTCGTCTGAGGGGTGGAA 4013624 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || || || |||| || | || || ||| | Sbjct 4013397 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4013338 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| | ||| |||||| || || || || || || |||||||| Sbjct 4013337 TGATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAGGGTATCCCTCCTGACCA 4013278 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | ||||||| ||||| | ||||| || Sbjct 4013277 GCAGAGGCTGATATTTGCCGGTAAACAGCTTGAAGATGGCCGCACCCTCTCAGATTATAA 4013218 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || ||| | || || | |||||||| |||| Sbjct 4013217 CATCCAGAAAGAATCCACCCTCCATCTTGTTCTCCGTCTAAGAGGTGGAA 4013168 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||||||||| || || | || || || ||||||| | || || || | Sbjct 4014767 ACCATGCAAATATTTGTGAAAACACTTACTGGGAAGACCATCACTCTTGAGGTCGAACCA 4014708 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||| || || |||| | || |||| ||| ||||||||||| || ||||| Sbjct 4014707 AGTGACACCATTGAAAATGTCA---AGGCTAAAATTCAA-GACAAAGAAGGAATCCCACC 4014652 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||| ||| | | || ||||| || |||||||| ||||||| || || | || Sbjct 4014651 TGACCAGCAGAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACACTTTCTGA 4014592 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||| ||||| || || | || ||||| | | || ||||| |||| Sbjct 4014591 TTACAATATTCAGAAAGAGTCAACCTTGCACTTAGTTTTGCGTCTTAGAGGTGGAA 4014536 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || || || |||| || | || || ||| | Sbjct 4014537 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4014478 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| |||||| || || || || || || || || || Sbjct 4014477 TGACACAATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGTATCCCTCCAGATCA 4014418 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| |||||||| | ||||||| || || || |||||||| Sbjct 4014417 GCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTGATTACAA 4014358 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || |||||||||||||| ||||||||| Sbjct 4014357 CATCCAGAAAGAATCCACGCTGCATTTAGTG 4014327 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || ||||| || ||| | ||||| | ||||||||| | Sbjct 4013169 AATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAG 4013110 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || ||||| | || | ||| ||||||||||| ||||| || |||| Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCAGACC 4013051 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || ||||| || ||||| | ||||||| || || || ||||| | Sbjct 4013050 AGCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATA 4012991 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || |||||||| || || || Sbjct 4012990 ACATCCAGAAAGAATCTACTCTGCA 4012966 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || || || |||| || | || || ||| | Sbjct 4013625 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4013566 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| | ||| |||||| || || || || || || |||||||| Sbjct 4013565 TGATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAGGGTATCCCTCCTGACCA 4013506 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| |||||||| | ||||||| ||||| | ||||| || Sbjct 4013505 GCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCAGATTATAA 4013446 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| | ||| | || || | || || || |||| Sbjct 4013445 CATCCAGAAAGAATCCACCTTGCATCTTGTCCTTCGTCTGAGGGGTGGAA 4013396 >seq293 Length=1515377 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 420157 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 420216 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || ||| |||||||| || || ||||| ||||| Sbjct 420217 GACACTATTGACAATGTGAAATGTAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAG 420276 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 420277 CAGCGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 420336 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || ||||| || Sbjct 420337 ATCCAGAAAGAATCCACCCTTCATCTTGTACTCCGTCTGAGAGGTGG 420383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || |||| || | || ||||| | ||| Sbjct 419701 ATGCAGATCTTTGTGAAAACTCTAACTGGAAAGACCATTACCCTGGAGGTGGAAGCATCT 419760 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || || || ||||| || || ||||| ||||| Sbjct 419761 GACACTATTGACAATGTGAAATGTAAGATACAAGATAAAGAGGGCATCCCACCAGACCAG 419820 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 419821 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 419880 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || ||||| || Sbjct 419881 ATCCAGAAAGAATCCACCCTTCATCTTGTACTCCGTCTGAGAGGTGG 419927 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 419929 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 419988 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || || || ||||| || || ||||| ||||| Sbjct 419989 GACACTATTGACAATGTGAAATGTAAGATACAAGATAAAGAGGGCATCCCACCAGACCAG 420048 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 420049 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 420108 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || ||||| || Sbjct 420109 ATCCAGAAAGAATCCACCCTTCATCTTGTACTCCGTCTGAGAGGTGG 420155 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| | || || |||| | Sbjct 420613 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGTGCAGT 420672 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || ||| |||||||| || || ||||| ||||| Sbjct 420673 GACACTATTGACAATGTGAAATGTAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAG 420732 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | |||||||| ||||| || | ||||||| ||||| | || ||||| Sbjct 420733 CAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 420792 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || | || || | || ||||| || Sbjct 420793 ATCCAGAAAGAATCCACCCTTCACCTTGTACTCCGTCTTAGAGGTGG 420839 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| | || || ||| | | Sbjct 92661 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 92720 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || ||||||| | || |||||||| || || ||||| ||| Sbjct 92721 GACACTATTGAG--AATGTCAAAGCAAAGATCCAA-GACAAAGAGGGTATCCCACCAGAC 92777 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| ||||| || | ||||| | ||||| | || ||| Sbjct 92778 CAGCAGAGATTGATATTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTAC 92837 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||||||||| || || | || || | || ||||| || Sbjct 92838 AACATCCAGAAAGAATCCACCCTTCACCTTGTACTCCGTCTGAGAGGTGG 92887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433194977512220