Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nanorana_20parkeri_20[refseq_20GCF_5F000935625.1_202015-03-17] 25,188 sequences; 2,053,867,363 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 4e-14 >seq13 Length=4293860 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| |||| || ||||| || ||| | ||| ||| || || Sbjct 4013169 AATGCAAATCTTTGTAAAAACCTTGACTGGAAAAACAATCACCCTAGAAGTGGAGCCAAG 4013110 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || || || ||| ||||||||||| ||||| || || Sbjct 4013109 TGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCAGACCA 4013050 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||| || || | ||| || ||||| |||||||| || || | |||||||| Sbjct 4013049 GCAAAGACTGATCTTTGCAGGAAAACAGCTGGAAGATGGCCGTACCTTGTCAGATTATAA 4012990 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||||||||| || || | || |||| || | |||||| Sbjct 4012989 CATCCAGAAAGAATCTACTCTGCACCTTGTCCTGCGCTTGAGGGGTGGC 4012941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || |||||||| ||||| |||| ||| || || Sbjct 4013852 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACAATTACTCTGGAGGTGGAGCCAAGT 4013793 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| ||||||||||| |||| ||||| Sbjct 4013792 GACACAATTGAGAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 4013733 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||||| | |||| ||| || ||||| |||||||| || | |||| | ||||||| Sbjct 4013732 CAAAGATTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGCACCCTAT--CAGATTATA 4013675 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || |||||||| || | ||| | || | |||||| | ||||| Sbjct 4013674 ACATCCAGAAAGAATCCACCTTGCATCTTGTCCTTCGTCTGAGGGGTGG 4013626 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | || || || |||||||| |||| || ||||| Sbjct 4014537 AATGCAAATCTTTGTGAAGACCTTAACAGGAAAGACCATTACTCTGGAGGTTGAGCCCAG 4014478 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACA-AAGAAGGCGTTCCCGTC-GAT 111303 || | ||| | || || ||||| || | | ||| ||| |||| | ||| Sbjct 4014477 TGACACAATTGAGAATGTTAAGGCCAAAAT--CCAAGATAAGGAGGGTATCCCTCCAGAT 4014420 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || ||||| || | ||| |||||||| | |||||| || || | ||||| Sbjct 4014419 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGTACCCTGTCTGATTAC 4014360 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || |||||||||||||||||| | ||||| Sbjct 4014359 AACATCCAGAAAGAATCCACGCTGCATTTAGTGTTGCGTCTGAGGGGTGG 4014310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422910135709600